Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12580

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12575 and BWI76_RS12580 overlap by 4 nucleotidesBWI76_RS12580 and BWI76_RS12585 overlap by 4 nucleotidesBWI76_RS12585 and BWI76_RS12590 are separated by 264 nucleotides BWI76_RS12575: BWI76_RS12575 - FAD-dependent oxidoreductase, at 2,625,455 to 2,626,714 _RS12575 BWI76_RS12580: BWI76_RS12580 - oxidoreductase, at 2,626,711 to 2,627,430 _RS12580 BWI76_RS12585: BWI76_RS12585 - transcriptional regulator, at 2,627,427 to 2,627,861 _RS12585 BWI76_RS12590: BWI76_RS12590 - helix-turn-helix-type transcriptional regulator, at 2,628,126 to 2,628,854 _RS12590 Position (kb) 2626 2627 2628Strain fitness (log2 ratio) -3 -2 -1 0 1at 2625.891 kb on + strand, within BWI76_RS12575at 2625.925 kb on - strand, within BWI76_RS12575at 2626.238 kb on - strand, within BWI76_RS12575at 2626.278 kb on - strand, within BWI76_RS12575at 2626.640 kb on + strandat 2626.709 kb on + strandat 2626.785 kb on + strand, within BWI76_RS12580at 2626.786 kb on + strand, within BWI76_RS12580at 2626.998 kb on - strand, within BWI76_RS12580at 2627.336 kb on - strand, within BWI76_RS12580at 2627.404 kb on + strandat 2627.610 kb on + strand, within BWI76_RS12585at 2627.726 kb on + strand, within BWI76_RS12585at 2627.801 kb on + strand, within BWI76_RS12585at 2627.815 kb on + strand, within BWI76_RS12585at 2627.868 kb on + strandat 2627.868 kb on + strandat 2627.868 kb on + strandat 2628.058 kb on - strandat 2628.400 kb on - strand, within BWI76_RS12590at 2628.416 kb on - strand, within BWI76_RS12590

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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2,625,891 + BWI76_RS12575 0.35 -2.8
2,625,925 - BWI76_RS12575 0.37 +1.2
2,626,238 - BWI76_RS12575 0.62 -0.2
2,626,278 - BWI76_RS12575 0.65 -1.5
2,626,640 + +0.2
2,626,709 + -0.4
2,626,785 + BWI76_RS12580 0.10 -2.1
2,626,786 + BWI76_RS12580 0.10 -2.2
2,626,998 - BWI76_RS12580 0.40 -0.7
2,627,336 - BWI76_RS12580 0.87 -0.3
2,627,404 + -0.9
2,627,610 + BWI76_RS12585 0.42 -1.5
2,627,726 + BWI76_RS12585 0.69 -0.0
2,627,801 + BWI76_RS12585 0.86 -0.1
2,627,815 + BWI76_RS12585 0.89 +1.1
2,627,868 + -0.7
2,627,868 + -1.8
2,627,868 + -1.5
2,628,058 - -0.3
2,628,400 - BWI76_RS12590 0.38 -0.1
2,628,416 - BWI76_RS12590 0.40 -0.1

Or see this region's nucleotide sequence