Experiment: KLEB29 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11275 and BWI76_RS11280 overlap by 4 nucleotides BWI76_RS11280 and BWI76_RS11285 are separated by 84 nucleotides BWI76_RS11285 and BWI76_RS11290 are separated by 100 nucleotides
BWI76_RS11275: BWI76_RS11275 - sensor protein PhoQ, at 2,377,821 to 2,379,287
_RS11275
BWI76_RS11280: BWI76_RS11280 - two-component system response regulator PhoP, at 2,379,284 to 2,379,958
_RS11280
BWI76_RS11285: BWI76_RS11285 - transcriptional regulator, at 2,380,043 to 2,380,489
_RS11285
BWI76_RS11290: BWI76_RS11290 - MFS transporter, at 2,380,590 to 2,381,819
_RS11290
Position (kb)
2379
2380 Strain fitness (log2 ratio)
-1
0
1
2 at 2378.339 kb on + strand, within BWI76_RS11275 at 2378.608 kb on + strand, within BWI76_RS11275 at 2378.608 kb on + strand, within BWI76_RS11275 at 2378.759 kb on - strand, within BWI76_RS11275 at 2378.772 kb on - strand, within BWI76_RS11275 at 2378.907 kb on + strand, within BWI76_RS11275 at 2379.027 kb on - strand, within BWI76_RS11275 at 2379.106 kb on + strand, within BWI76_RS11275 at 2379.930 kb on + strand at 2380.386 kb on - strand, within BWI76_RS11285 at 2380.818 kb on + strand, within BWI76_RS11290 at 2380.884 kb on - strand, within BWI76_RS11290
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 1 remove 2,378,339 + BWI76_RS11275 0.35 +0.2 2,378,608 + BWI76_RS11275 0.54 -0.7 2,378,608 + BWI76_RS11275 0.54 -0.6 2,378,759 - BWI76_RS11275 0.64 -1.1 2,378,772 - BWI76_RS11275 0.65 -0.9 2,378,907 + BWI76_RS11275 0.74 -0.7 2,379,027 - BWI76_RS11275 0.82 -1.6 2,379,106 + BWI76_RS11275 0.88 -0.8 2,379,930 + -0.0 2,380,386 - BWI76_RS11285 0.77 +2.0 2,380,818 + BWI76_RS11290 0.19 +0.6 2,380,884 - BWI76_RS11290 0.24 +0.6
Or see this region's nucleotide sequence