Experiment: KLEB29 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09265 and BWI76_RS09270 are separated by 140 nucleotides BWI76_RS09270 and BWI76_RS09275 are separated by 16 nucleotides
BWI76_RS09265: BWI76_RS09265 - oxidoreductase, at 1,951,152 to 1,952,915
_RS09265
BWI76_RS09270: BWI76_RS09270 - capsid scaffold-like protein, at 1,953,056 to 1,953,889
_RS09270
BWI76_RS09275: BWI76_RS09275 - major capsid protein, at 1,953,906 to 1,954,958
_RS09275
Position (kb)
1953
1954 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1952.190 kb on + strand, within BWI76_RS09265 at 1952.244 kb on - strand, within BWI76_RS09265 at 1952.260 kb on + strand, within BWI76_RS09265 at 1952.272 kb on + strand, within BWI76_RS09265 at 1952.370 kb on - strand, within BWI76_RS09265 at 1952.374 kb on - strand, within BWI76_RS09265 at 1952.374 kb on - strand, within BWI76_RS09265 at 1952.410 kb on - strand, within BWI76_RS09265 at 1952.599 kb on - strand, within BWI76_RS09265 at 1952.750 kb on + strand at 1952.767 kb on - strand at 1952.767 kb on - strand at 1952.935 kb on + strand at 1952.938 kb on - strand at 1952.993 kb on + strand at 1953.153 kb on + strand, within BWI76_RS09270 at 1953.166 kb on + strand, within BWI76_RS09270 at 1953.166 kb on + strand, within BWI76_RS09270 at 1953.166 kb on + strand, within BWI76_RS09270 at 1953.209 kb on + strand, within BWI76_RS09270 at 1953.209 kb on + strand, within BWI76_RS09270 at 1953.209 kb on + strand, within BWI76_RS09270 at 1953.420 kb on + strand, within BWI76_RS09270 at 1953.694 kb on - strand, within BWI76_RS09270 at 1953.741 kb on - strand, within BWI76_RS09270 at 1954.046 kb on - strand, within BWI76_RS09275 at 1954.208 kb on - strand, within BWI76_RS09275 at 1954.310 kb on + strand, within BWI76_RS09275 at 1954.325 kb on - strand, within BWI76_RS09275 at 1954.356 kb on - strand, within BWI76_RS09275 at 1954.620 kb on - strand, within BWI76_RS09275
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 1 remove 1,952,190 + BWI76_RS09265 0.59 +0.3 1,952,244 - BWI76_RS09265 0.62 -1.0 1,952,260 + BWI76_RS09265 0.63 +0.6 1,952,272 + BWI76_RS09265 0.63 +0.2 1,952,370 - BWI76_RS09265 0.69 -0.1 1,952,374 - BWI76_RS09265 0.69 -2.2 1,952,374 - BWI76_RS09265 0.69 +0.9 1,952,410 - BWI76_RS09265 0.71 +0.1 1,952,599 - BWI76_RS09265 0.82 +0.0 1,952,750 + -0.4 1,952,767 - +0.2 1,952,767 - -1.2 1,952,935 + +0.2 1,952,938 - +0.1 1,952,993 + +0.0 1,953,153 + BWI76_RS09270 0.12 -0.2 1,953,166 + BWI76_RS09270 0.13 -0.6 1,953,166 + BWI76_RS09270 0.13 -0.8 1,953,166 + BWI76_RS09270 0.13 -3.2 1,953,209 + BWI76_RS09270 0.18 -1.7 1,953,209 + BWI76_RS09270 0.18 -0.8 1,953,209 + BWI76_RS09270 0.18 -1.1 1,953,420 + BWI76_RS09270 0.44 -0.1 1,953,694 - BWI76_RS09270 0.76 +0.1 1,953,741 - BWI76_RS09270 0.82 +0.4 1,954,046 - BWI76_RS09275 0.13 -0.1 1,954,208 - BWI76_RS09275 0.29 -2.6 1,954,310 + BWI76_RS09275 0.38 +0.1 1,954,325 - BWI76_RS09275 0.40 -3.3 1,954,356 - BWI76_RS09275 0.43 +0.7 1,954,620 - BWI76_RS09275 0.68 -0.2
Or see this region's nucleotide sequence