Experiment: KLEB29 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03435 and BWI76_RS03440 are separated by 52 nucleotides BWI76_RS03440 and BWI76_RS03445 are separated by 144 nucleotides
BWI76_RS03435: BWI76_RS03435 - mandelate racemase/muconate lactonizing protein, at 706,391 to 707,494
_RS03435
BWI76_RS03440: BWI76_RS03440 - MFS transporter, at 707,547 to 708,998
_RS03440
BWI76_RS03445: BWI76_RS03445 - hypothetical protein, at 709,143 to 710,792
_RS03445
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 706.667 kb on + strand, within BWI76_RS03435 at 706.714 kb on + strand, within BWI76_RS03435 at 706.740 kb on + strand, within BWI76_RS03435 at 707.059 kb on + strand, within BWI76_RS03435 at 707.165 kb on - strand, within BWI76_RS03435 at 707.277 kb on - strand, within BWI76_RS03435 at 707.409 kb on + strand at 707.432 kb on - strand at 707.537 kb on - strand at 707.738 kb on + strand, within BWI76_RS03440 at 707.746 kb on - strand, within BWI76_RS03440 at 707.756 kb on - strand, within BWI76_RS03440 at 707.917 kb on - strand, within BWI76_RS03440 at 707.922 kb on + strand, within BWI76_RS03440 at 708.190 kb on - strand, within BWI76_RS03440 at 708.287 kb on - strand, within BWI76_RS03440 at 708.304 kb on + strand, within BWI76_RS03440 at 708.517 kb on + strand, within BWI76_RS03440 at 708.550 kb on + strand, within BWI76_RS03440 at 708.599 kb on + strand, within BWI76_RS03440 at 708.599 kb on + strand, within BWI76_RS03440 at 708.643 kb on + strand, within BWI76_RS03440 at 708.674 kb on - strand, within BWI76_RS03440 at 708.748 kb on + strand, within BWI76_RS03440 at 708.779 kb on + strand, within BWI76_RS03440 at 708.809 kb on + strand, within BWI76_RS03440 at 708.908 kb on + strand at 708.913 kb on + strand at 708.921 kb on - strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.931 kb on + strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.936 kb on + strand at 708.940 kb on - strand at 708.941 kb on - strand at 708.960 kb on - strand at 709.005 kb on - strand at 709.005 kb on - strand at 709.019 kb on - strand at 709.021 kb on + strand at 709.021 kb on + strand at 709.029 kb on - strand at 709.040 kb on - strand at 709.042 kb on + strand at 709.042 kb on + strand at 709.045 kb on - strand at 709.045 kb on - strand at 709.052 kb on + strand at 709.055 kb on - strand at 709.055 kb on - strand at 709.216 kb on - strand at 709.226 kb on + strand at 709.230 kb on + strand at 709.236 kb on + strand at 709.244 kb on + strand at 709.249 kb on + strand at 709.249 kb on + strand at 709.249 kb on + strand at 709.257 kb on - strand at 709.267 kb on + strand at 709.275 kb on - strand at 709.306 kb on + strand at 709.319 kb on - strand, within BWI76_RS03445 at 709.465 kb on + strand, within BWI76_RS03445 at 709.465 kb on + strand, within BWI76_RS03445 at 709.473 kb on - strand, within BWI76_RS03445 at 709.473 kb on - strand, within BWI76_RS03445 at 709.483 kb on - strand, within BWI76_RS03445 at 709.707 kb on + strand, within BWI76_RS03445 at 709.710 kb on - strand, within BWI76_RS03445 at 709.755 kb on - strand, within BWI76_RS03445 at 709.945 kb on - strand, within BWI76_RS03445 at 709.952 kb on + strand, within BWI76_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 1 remove 706,667 + BWI76_RS03435 0.25 -0.6 706,714 + BWI76_RS03435 0.29 +0.7 706,740 + BWI76_RS03435 0.32 -1.6 707,059 + BWI76_RS03435 0.61 +1.0 707,165 - BWI76_RS03435 0.70 +1.6 707,277 - BWI76_RS03435 0.80 -0.2 707,409 + -0.5 707,432 - -0.3 707,537 - -0.9 707,738 + BWI76_RS03440 0.13 -0.1 707,746 - BWI76_RS03440 0.14 -0.7 707,756 - BWI76_RS03440 0.14 -0.7 707,917 - BWI76_RS03440 0.25 -0.9 707,922 + BWI76_RS03440 0.26 -1.0 708,190 - BWI76_RS03440 0.44 -0.7 708,287 - BWI76_RS03440 0.51 -1.7 708,304 + BWI76_RS03440 0.52 +2.5 708,517 + BWI76_RS03440 0.67 -0.9 708,550 + BWI76_RS03440 0.69 +0.3 708,599 + BWI76_RS03440 0.72 -1.9 708,599 + BWI76_RS03440 0.72 -1.7 708,643 + BWI76_RS03440 0.75 -0.6 708,674 - BWI76_RS03440 0.78 +0.9 708,748 + BWI76_RS03440 0.83 -0.6 708,779 + BWI76_RS03440 0.85 -1.1 708,809 + BWI76_RS03440 0.87 -0.4 708,908 + -1.7 708,913 + +2.9 708,921 - -1.7 708,924 + -0.2 708,924 + -1.1 708,924 + +0.3 708,924 + +0.6 708,924 + -0.6 708,924 + -1.0 708,924 + +1.5 708,924 + -0.0 708,924 + -1.7 708,924 + -1.9 708,931 + -0.5 708,932 - +1.3 708,932 - +1.1 708,932 - +0.4 708,932 - -0.9 708,932 - -1.2 708,932 - -1.6 708,932 - -1.3 708,932 - +1.7 708,932 - +0.7 708,936 + -3.0 708,940 - +0.1 708,941 - +0.0 708,960 - -1.1 709,005 - -0.8 709,005 - -1.1 709,019 - -1.1 709,021 + -1.0 709,021 + +0.2 709,029 - +0.1 709,040 - +1.0 709,042 + -3.2 709,042 + -1.2 709,045 - +0.2 709,045 - -1.5 709,052 + -0.3 709,055 - +0.3 709,055 - +1.9 709,216 - -1.5 709,226 + +1.0 709,230 + -1.5 709,236 + -0.2 709,244 + -1.0 709,249 + -0.1 709,249 + -0.8 709,249 + -0.4 709,257 - +0.0 709,267 + +0.2 709,275 - +1.0 709,306 + -0.1 709,319 - BWI76_RS03445 0.11 -0.2 709,465 + BWI76_RS03445 0.20 -1.1 709,465 + BWI76_RS03445 0.20 +0.7 709,473 - BWI76_RS03445 0.20 +0.7 709,473 - BWI76_RS03445 0.20 +0.6 709,483 - BWI76_RS03445 0.21 +1.0 709,707 + BWI76_RS03445 0.34 -0.1 709,710 - BWI76_RS03445 0.34 -0.3 709,755 - BWI76_RS03445 0.37 -0.0 709,945 - BWI76_RS03445 0.49 -0.7 709,952 + BWI76_RS03445 0.49 -0.7
Or see this region's nucleotide sequence