Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24725

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24715 and BWI76_RS24720 are separated by 15 nucleotidesBWI76_RS24720 and BWI76_RS24725 are separated by 94 nucleotidesBWI76_RS24725 and BWI76_RS24730 are separated by 18 nucleotides BWI76_RS24715: BWI76_RS24715 - serine/threonine transporter SstT, at 5,154,087 to 5,155,334 _RS24715 BWI76_RS24720: BWI76_RS24720 - hypothetical protein, at 5,155,350 to 5,155,904 _RS24720 BWI76_RS24725: BWI76_RS24725 - altronate hydrolase, at 5,155,999 to 5,157,486 _RS24725 BWI76_RS24730: BWI76_RS24730 - uronate isomerase, at 5,157,505 to 5,158,917 _RS24730 Position (kb) 5155 5156 5157 5158Strain fitness (log2 ratio) -2 -1 0 1 2at 5155.006 kb on + strand, within BWI76_RS24715at 5155.365 kb on + strandat 5155.632 kb on - strand, within BWI76_RS24720at 5155.811 kb on + strand, within BWI76_RS24720at 5155.886 kb on - strandat 5156.052 kb on + strandat 5156.054 kb on + strandat 5156.054 kb on + strandat 5156.088 kb on - strandat 5156.090 kb on - strandat 5156.278 kb on + strand, within BWI76_RS24725at 5156.298 kb on - strand, within BWI76_RS24725at 5156.325 kb on + strand, within BWI76_RS24725at 5156.497 kb on - strand, within BWI76_RS24725at 5156.827 kb on - strand, within BWI76_RS24725at 5156.901 kb on - strand, within BWI76_RS24725at 5157.201 kb on + strand, within BWI76_RS24725at 5157.351 kb on + strandat 5157.359 kb on - strandat 5157.359 kb on - strandat 5157.359 kb on - strandat 5157.359 kb on - strandat 5157.417 kb on - strandat 5157.483 kb on + strandat 5157.659 kb on + strand, within BWI76_RS24730at 5157.713 kb on + strand, within BWI76_RS24730at 5157.903 kb on - strand, within BWI76_RS24730at 5158.062 kb on - strand, within BWI76_RS24730at 5158.088 kb on + strand, within BWI76_RS24730at 5158.259 kb on + strand, within BWI76_RS24730at 5158.353 kb on - strand, within BWI76_RS24730

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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5,155,006 + BWI76_RS24715 0.74 -0.3
5,155,365 + +2.0
5,155,632 - BWI76_RS24720 0.51 +1.4
5,155,811 + BWI76_RS24720 0.83 -2.2
5,155,886 - -0.9
5,156,052 + -0.4
5,156,054 + -2.1
5,156,054 + -1.5
5,156,088 - -1.3
5,156,090 - +0.1
5,156,278 + BWI76_RS24725 0.19 +0.5
5,156,298 - BWI76_RS24725 0.20 -0.3
5,156,325 + BWI76_RS24725 0.22 -2.7
5,156,497 - BWI76_RS24725 0.33 -1.8
5,156,827 - BWI76_RS24725 0.56 -2.0
5,156,901 - BWI76_RS24725 0.61 -2.1
5,157,201 + BWI76_RS24725 0.81 -0.6
5,157,351 + +0.1
5,157,359 - -1.8
5,157,359 - -1.5
5,157,359 - +0.2
5,157,359 - +2.6
5,157,417 - -0.6
5,157,483 + +0.0
5,157,659 + BWI76_RS24730 0.11 -1.7
5,157,713 + BWI76_RS24730 0.15 -0.5
5,157,903 - BWI76_RS24730 0.28 -0.2
5,158,062 - BWI76_RS24730 0.39 -1.1
5,158,088 + BWI76_RS24730 0.41 -1.0
5,158,259 + BWI76_RS24730 0.53 -1.6
5,158,353 - BWI76_RS24730 0.60 +0.2

Or see this region's nucleotide sequence