Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19470

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19460 and BWI76_RS19465 are separated by 110 nucleotidesBWI76_RS19465 and BWI76_RS19470 are separated by 53 nucleotidesBWI76_RS19470 and BWI76_RS19475 overlap by 7 nucleotides BWI76_RS19460: BWI76_RS19460 - lipoprotein, at 4,067,651 to 4,068,112 _RS19460 BWI76_RS19465: BWI76_RS19465 - hypothetical protein, at 4,068,223 to 4,068,690 _RS19465 BWI76_RS19470: BWI76_RS19470 - DNA-binding response regulator, at 4,068,744 to 4,069,463 _RS19470 BWI76_RS19475: BWI76_RS19475 - signal transduction histidine kinase, at 4,069,457 to 4,071,145 _RS19475 Position (kb) 4068 4069 4070Strain fitness (log2 ratio) -3 -2 -1 0 1at 4067.766 kb on - strand, within BWI76_RS19460at 4067.785 kb on - strand, within BWI76_RS19460at 4067.824 kb on + strand, within BWI76_RS19460at 4067.911 kb on - strand, within BWI76_RS19460at 4068.120 kb on - strandat 4068.441 kb on - strand, within BWI76_RS19465at 4068.528 kb on + strand, within BWI76_RS19465at 4068.530 kb on - strand, within BWI76_RS19465at 4068.653 kb on + strandat 4069.303 kb on + strand, within BWI76_RS19470at 4069.528 kb on - strandat 4069.690 kb on + strand, within BWI76_RS19475at 4069.768 kb on + strand, within BWI76_RS19475at 4070.172 kb on - strand, within BWI76_RS19475at 4070.380 kb on - strand, within BWI76_RS19475

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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4,067,766 - BWI76_RS19460 0.25 +0.3
4,067,785 - BWI76_RS19460 0.29 -2.4
4,067,824 + BWI76_RS19460 0.37 -0.9
4,067,911 - BWI76_RS19460 0.56 -3.0
4,068,120 - -0.9
4,068,441 - BWI76_RS19465 0.47 +1.1
4,068,528 + BWI76_RS19465 0.65 -0.7
4,068,530 - BWI76_RS19465 0.66 -0.7
4,068,653 + -3.1
4,069,303 + BWI76_RS19470 0.78 -1.2
4,069,528 - +0.6
4,069,690 + BWI76_RS19475 0.14 +0.1
4,069,768 + BWI76_RS19475 0.18 +0.9
4,070,172 - BWI76_RS19475 0.42 +0.5
4,070,380 - BWI76_RS19475 0.55 +0.4

Or see this region's nucleotide sequence