Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19440

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19435 and BWI76_RS19440 are separated by 77 nucleotidesBWI76_RS19440 and BWI76_RS19445 are separated by 10 nucleotides BWI76_RS19435: BWI76_RS19435 - hypothetical protein, at 4,057,441 to 4,061,037 _RS19435 BWI76_RS19440: BWI76_RS19440 - putative transporter subunit, at 4,061,115 to 4,062,203 _RS19440 BWI76_RS19445: BWI76_RS19445 - hypothetical protein, at 4,062,214 to 4,064,499 _RS19445 Position (kb) 4061 4062 4063Strain fitness (log2 ratio) -3 -2 -1 0 1at 4060.153 kb on - strand, within BWI76_RS19435at 4060.291 kb on + strand, within BWI76_RS19435at 4060.326 kb on - strand, within BWI76_RS19435at 4060.521 kb on + strand, within BWI76_RS19435at 4061.256 kb on - strand, within BWI76_RS19440at 4061.405 kb on - strand, within BWI76_RS19440at 4061.551 kb on - strand, within BWI76_RS19440at 4061.682 kb on + strand, within BWI76_RS19440at 4061.860 kb on + strand, within BWI76_RS19440at 4062.257 kb on - strandat 4062.261 kb on - strandat 4062.261 kb on - strandat 4062.263 kb on + strandat 4062.383 kb on - strandat 4062.497 kb on - strand, within BWI76_RS19445at 4062.525 kb on + strand, within BWI76_RS19445at 4062.582 kb on + strand, within BWI76_RS19445at 4062.601 kb on - strand, within BWI76_RS19445at 4062.732 kb on - strand, within BWI76_RS19445at 4062.999 kb on + strand, within BWI76_RS19445at 4063.156 kb on - strand, within BWI76_RS19445

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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4,060,153 - BWI76_RS19435 0.75 -0.7
4,060,291 + BWI76_RS19435 0.79 -1.5
4,060,326 - BWI76_RS19435 0.80 +0.0
4,060,521 + BWI76_RS19435 0.86 -1.4
4,061,256 - BWI76_RS19440 0.13 -0.4
4,061,405 - BWI76_RS19440 0.27 -0.4
4,061,551 - BWI76_RS19440 0.40 -0.4
4,061,682 + BWI76_RS19440 0.52 -1.4
4,061,860 + BWI76_RS19440 0.68 -1.2
4,062,257 - +0.0
4,062,261 - -1.3
4,062,261 - -0.6
4,062,263 + -0.7
4,062,383 - -2.8
4,062,497 - BWI76_RS19445 0.12 -0.9
4,062,525 + BWI76_RS19445 0.14 +1.4
4,062,582 + BWI76_RS19445 0.16 -0.3
4,062,601 - BWI76_RS19445 0.17 +0.9
4,062,732 - BWI76_RS19445 0.23 -0.3
4,062,999 + BWI76_RS19445 0.34 -1.6
4,063,156 - BWI76_RS19445 0.41 -0.7

Or see this region's nucleotide sequence