Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19435

Experiment: KLEB29 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19430 and BWI76_RS19435 are separated by 14 nucleotidesBWI76_RS19435 and BWI76_RS19440 are separated by 77 nucleotides BWI76_RS19430: BWI76_RS19430 - MolR family transcriptional regulator, at 4,053,710 to 4,057,426 _RS19430 BWI76_RS19435: BWI76_RS19435 - hypothetical protein, at 4,057,441 to 4,061,037 _RS19435 BWI76_RS19440: BWI76_RS19440 - putative transporter subunit, at 4,061,115 to 4,062,203 _RS19440 Position (kb) 4057 4058 4059 4060 4061 4062Strain fitness (log2 ratio) -1 0 1at 4057.179 kb on + strandat 4057.272 kb on + strandat 4057.372 kb on + strandat 4057.578 kb on - strandat 4057.760 kb on + strandat 4057.768 kb on - strandat 4057.788 kb on + strandat 4058.940 kb on - strand, within BWI76_RS19435at 4059.321 kb on + strand, within BWI76_RS19435at 4059.541 kb on + strand, within BWI76_RS19435at 4060.093 kb on - strand, within BWI76_RS19435at 4060.153 kb on - strand, within BWI76_RS19435at 4060.291 kb on + strand, within BWI76_RS19435at 4060.326 kb on - strand, within BWI76_RS19435at 4060.521 kb on + strand, within BWI76_RS19435at 4061.256 kb on - strand, within BWI76_RS19440at 4061.405 kb on - strand, within BWI76_RS19440at 4061.551 kb on - strand, within BWI76_RS19440at 4061.682 kb on + strand, within BWI76_RS19440at 4061.860 kb on + strand, within BWI76_RS19440

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB29 MOI 1
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4,057,179 + -1.7
4,057,272 + -0.4
4,057,372 + -0.6
4,057,578 - +0.5
4,057,760 + -0.9
4,057,768 - -0.1
4,057,788 + -0.6
4,058,940 - BWI76_RS19435 0.42 -1.5
4,059,321 + BWI76_RS19435 0.52 +0.0
4,059,541 + BWI76_RS19435 0.58 -0.1
4,060,093 - BWI76_RS19435 0.74 -1.6
4,060,153 - BWI76_RS19435 0.75 -0.7
4,060,291 + BWI76_RS19435 0.79 -1.5
4,060,326 - BWI76_RS19435 0.80 +0.0
4,060,521 + BWI76_RS19435 0.86 -1.4
4,061,256 - BWI76_RS19440 0.13 -0.4
4,061,405 - BWI76_RS19440 0.27 -0.4
4,061,551 - BWI76_RS19440 0.40 -0.4
4,061,682 + BWI76_RS19440 0.52 -1.4
4,061,860 + BWI76_RS19440 0.68 -1.2

Or see this region's nucleotide sequence