Experiment: KLEB29 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18750 and BWI76_RS18755 are separated by 39 nucleotides BWI76_RS18755 and BWI76_RS18760 are separated by 193 nucleotides BWI76_RS18760 and BWI76_RS18765 are separated by 168 nucleotides BWI76_RS18765 and BWI76_RS18770 are separated by 102 nucleotides BWI76_RS18770 and BWI76_RS18775 are separated by 127 nucleotides
BWI76_RS18750: BWI76_RS18750 - adenosylcobinamide-GDP ribazoletransferase, at 3,886,872 to 3,887,612
_RS18750
BWI76_RS18755: BWI76_RS18755 - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 3,887,652 to 3,887,885
_RS18755
BWI76_RS18760: BWI76_RS18760 - hypothetical protein, at 3,888,079 to 3,888,414
_RS18760
BWI76_RS18765: BWI76_RS18765 - FUSC family protein, at 3,888,583 to 3,889,641
_RS18765
BWI76_RS18770: BWI76_RS18770 - DNA gyrase inhibitor, at 3,889,744 to 3,890,217
_RS18770
BWI76_RS18775: BWI76_RS18775 - hypothetical protein, at 3,890,345 to 3,891,781
_RS18775
Position (kb)
3888
3889
3890 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3887.695 kb on + strand, within BWI76_RS18755 at 3888.459 kb on + strand at 3888.776 kb on + strand, within BWI76_RS18765 at 3888.848 kb on - strand, within BWI76_RS18765 at 3888.914 kb on + strand, within BWI76_RS18765 at 3889.086 kb on + strand, within BWI76_RS18765 at 3889.189 kb on + strand, within BWI76_RS18765 at 3889.350 kb on - strand, within BWI76_RS18765 at 3889.536 kb on + strand at 3889.544 kb on - strand at 3890.075 kb on + strand, within BWI76_RS18770 at 3890.198 kb on + strand at 3890.278 kb on + strand at 3890.378 kb on + strand at 3890.544 kb on + strand, within BWI76_RS18775
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB29 MOI 1 remove 3,887,695 + BWI76_RS18755 0.18 +1.1 3,888,459 + -1.0 3,888,776 + BWI76_RS18765 0.18 -0.8 3,888,848 - BWI76_RS18765 0.25 -1.3 3,888,914 + BWI76_RS18765 0.31 -2.9 3,889,086 + BWI76_RS18765 0.47 -0.1 3,889,189 + BWI76_RS18765 0.57 -2.5 3,889,350 - BWI76_RS18765 0.72 -1.1 3,889,536 + -0.7 3,889,544 - +1.4 3,890,075 + BWI76_RS18770 0.70 -0.3 3,890,198 + +0.8 3,890,278 + -0.6 3,890,378 + +2.0 3,890,544 + BWI76_RS18775 0.14 +1.8
Or see this region's nucleotide sequence