Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27720

Experiment: KLEB26 MOI0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27715 and BWI76_RS27720 are separated by 249 nucleotidesBWI76_RS27720 and BWI76_RS27725 are separated by 3 nucleotidesBWI76_RS27725 and BWI76_RS27730 overlap by 1 nucleotides BWI76_RS27715: BWI76_RS27715 - PTS N-acetylmuramic acid transporter subunits IIBC, at 5,752,134 to 5,753,567 _RS27715 BWI76_RS27720: BWI76_RS27720 - carboxylate/amino acid/amine transporter, at 5,753,817 to 5,754,719 _RS27720 BWI76_RS27725: BWI76_RS27725 - hypothetical protein, at 5,754,723 to 5,754,980 _RS27725 BWI76_RS27730: BWI76_RS27730 - ISNCY family transposase, at 5,754,980 to 5,755,933 _RS27730 Position (kb) 5753 5754 5755Strain fitness (log2 ratio) -2 -1 0 1 2at 5753.007 kb on - strand, within BWI76_RS27715at 5753.018 kb on + strand, within BWI76_RS27715at 5753.046 kb on - strand, within BWI76_RS27715at 5753.096 kb on - strand, within BWI76_RS27715at 5753.110 kb on + strand, within BWI76_RS27715at 5753.120 kb on + strand, within BWI76_RS27715at 5753.142 kb on - strand, within BWI76_RS27715at 5753.180 kb on + strand, within BWI76_RS27715at 5753.193 kb on - strand, within BWI76_RS27715at 5753.531 kb on - strandat 5753.531 kb on - strandat 5753.681 kb on + strandat 5753.716 kb on + strandat 5753.724 kb on - strandat 5753.724 kb on - strandat 5753.798 kb on + strandat 5753.857 kb on + strandat 5753.883 kb on - strandat 5753.943 kb on + strand, within BWI76_RS27720at 5753.992 kb on + strand, within BWI76_RS27720at 5754.116 kb on + strand, within BWI76_RS27720at 5754.196 kb on - strand, within BWI76_RS27720at 5754.288 kb on + strand, within BWI76_RS27720at 5754.293 kb on + strand, within BWI76_RS27720at 5754.293 kb on + strand, within BWI76_RS27720at 5754.296 kb on - strand, within BWI76_RS27720at 5754.301 kb on - strand, within BWI76_RS27720at 5754.301 kb on - strand, within BWI76_RS27720at 5754.457 kb on + strand, within BWI76_RS27720at 5754.502 kb on - strand, within BWI76_RS27720at 5754.511 kb on + strand, within BWI76_RS27720at 5754.519 kb on - strand, within BWI76_RS27720at 5754.519 kb on - strand, within BWI76_RS27720at 5754.582 kb on - strand, within BWI76_RS27720at 5754.602 kb on - strand, within BWI76_RS27720at 5754.625 kb on + strand, within BWI76_RS27720at 5754.869 kb on + strandat 5754.898 kb on + strandat 5754.963 kb on + strandat 5755.016 kb on - strandat 5755.039 kb on + strandat 5755.231 kb on + strand, within BWI76_RS27730at 5755.239 kb on - strand, within BWI76_RS27730at 5755.290 kb on - strand, within BWI76_RS27730at 5755.295 kb on - strand, within BWI76_RS27730at 5755.315 kb on + strand, within BWI76_RS27730at 5755.434 kb on - strand, within BWI76_RS27730at 5755.539 kb on + strand, within BWI76_RS27730at 5755.568 kb on - strand, within BWI76_RS27730at 5755.671 kb on + strand, within BWI76_RS27730at 5755.676 kb on + strand, within BWI76_RS27730at 5755.684 kb on - strand, within BWI76_RS27730at 5755.701 kb on + strand, within BWI76_RS27730

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB26 MOI0.1
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5,753,007 - BWI76_RS27715 0.61 -0.4
5,753,018 + BWI76_RS27715 0.62 -0.1
5,753,046 - BWI76_RS27715 0.64 -0.5
5,753,096 - BWI76_RS27715 0.67 -0.3
5,753,110 + BWI76_RS27715 0.68 +0.3
5,753,120 + BWI76_RS27715 0.69 +0.1
5,753,142 - BWI76_RS27715 0.70 -2.6
5,753,180 + BWI76_RS27715 0.73 +0.1
5,753,193 - BWI76_RS27715 0.74 +0.3
5,753,531 - +0.6
5,753,531 - +0.2
5,753,681 + -0.6
5,753,716 + -0.1
5,753,724 - +2.2
5,753,724 - +0.0
5,753,798 + -0.5
5,753,857 + +0.1
5,753,883 - +1.0
5,753,943 + BWI76_RS27720 0.14 +0.2
5,753,992 + BWI76_RS27720 0.19 -0.5
5,754,116 + BWI76_RS27720 0.33 +0.7
5,754,196 - BWI76_RS27720 0.42 +0.6
5,754,288 + BWI76_RS27720 0.52 +0.2
5,754,293 + BWI76_RS27720 0.53 -1.3
5,754,293 + BWI76_RS27720 0.53 +0.2
5,754,296 - BWI76_RS27720 0.53 +0.1
5,754,301 - BWI76_RS27720 0.54 +0.6
5,754,301 - BWI76_RS27720 0.54 +1.1
5,754,457 + BWI76_RS27720 0.71 +1.2
5,754,502 - BWI76_RS27720 0.76 +1.7
5,754,511 + BWI76_RS27720 0.77 +0.7
5,754,519 - BWI76_RS27720 0.78 +0.2
5,754,519 - BWI76_RS27720 0.78 -0.2
5,754,582 - BWI76_RS27720 0.85 +0.7
5,754,602 - BWI76_RS27720 0.87 +0.8
5,754,625 + BWI76_RS27720 0.89 +1.2
5,754,869 + -1.9
5,754,898 + +0.7
5,754,963 + -0.3
5,755,016 - -0.6
5,755,039 + +0.1
5,755,231 + BWI76_RS27730 0.26 +1.0
5,755,239 - BWI76_RS27730 0.27 +0.2
5,755,290 - BWI76_RS27730 0.32 -0.0
5,755,295 - BWI76_RS27730 0.33 +1.7
5,755,315 + BWI76_RS27730 0.35 -0.1
5,755,434 - BWI76_RS27730 0.48 -0.2
5,755,539 + BWI76_RS27730 0.59 +1.0
5,755,568 - BWI76_RS27730 0.62 +0.5
5,755,671 + BWI76_RS27730 0.72 +0.7
5,755,676 + BWI76_RS27730 0.73 +1.0
5,755,684 - BWI76_RS27730 0.74 +0.2
5,755,701 + BWI76_RS27730 0.76 -0.6

Or see this region's nucleotide sequence