Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07220

Experiment: KLEB26 MOI0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07215 and BWI76_RS07220 are separated by 162 nucleotidesBWI76_RS07220 and BWI76_RS07225 are separated by 39 nucleotides BWI76_RS07215: BWI76_RS07215 - class A extended-spectrum beta-lactamase OXY-6-4, at 1,517,815 to 1,518,690 _RS07215 BWI76_RS07220: BWI76_RS07220 - oxidoreductase NAD-binding protein, at 1,518,853 to 1,519,884 _RS07220 BWI76_RS07225: BWI76_RS07225 - putative oxidoreductase, at 1,519,924 to 1,520,931 _RS07225 Position (kb) 1518 1519 1520Strain fitness (log2 ratio) -1 0 1at 1517.886 kb on - strandat 1517.889 kb on + strandat 1518.009 kb on + strand, within BWI76_RS07215at 1518.148 kb on - strand, within BWI76_RS07215at 1518.170 kb on - strand, within BWI76_RS07215at 1518.172 kb on + strand, within BWI76_RS07215at 1518.172 kb on + strand, within BWI76_RS07215at 1518.220 kb on + strand, within BWI76_RS07215at 1518.223 kb on - strand, within BWI76_RS07215at 1518.225 kb on + strand, within BWI76_RS07215at 1518.316 kb on + strand, within BWI76_RS07215at 1518.319 kb on - strand, within BWI76_RS07215at 1518.335 kb on - strand, within BWI76_RS07215at 1518.444 kb on - strand, within BWI76_RS07215at 1518.478 kb on - strand, within BWI76_RS07215at 1518.532 kb on + strand, within BWI76_RS07215at 1518.535 kb on - strand, within BWI76_RS07215at 1518.535 kb on - strand, within BWI76_RS07215at 1518.540 kb on - strand, within BWI76_RS07215at 1518.597 kb on + strandat 1518.688 kb on - strandat 1518.697 kb on + strandat 1518.898 kb on + strandat 1518.943 kb on + strandat 1518.985 kb on - strand, within BWI76_RS07220at 1519.007 kb on - strand, within BWI76_RS07220at 1519.056 kb on + strand, within BWI76_RS07220at 1519.206 kb on + strand, within BWI76_RS07220at 1519.337 kb on - strand, within BWI76_RS07220at 1519.443 kb on - strand, within BWI76_RS07220at 1519.466 kb on - strand, within BWI76_RS07220at 1519.566 kb on + strand, within BWI76_RS07220at 1519.901 kb on - strandat 1519.990 kb on + strandat 1520.042 kb on - strand, within BWI76_RS07225at 1520.222 kb on + strand, within BWI76_RS07225at 1520.230 kb on - strand, within BWI76_RS07225at 1520.485 kb on - strand, within BWI76_RS07225

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB26 MOI0.1
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1,517,886 - -0.8
1,517,889 + +0.5
1,518,009 + BWI76_RS07215 0.22 +0.0
1,518,148 - BWI76_RS07215 0.38 -0.4
1,518,170 - BWI76_RS07215 0.41 -0.3
1,518,172 + BWI76_RS07215 0.41 -0.3
1,518,172 + BWI76_RS07215 0.41 -0.1
1,518,220 + BWI76_RS07215 0.46 +0.3
1,518,223 - BWI76_RS07215 0.47 +1.5
1,518,225 + BWI76_RS07215 0.47 +0.6
1,518,316 + BWI76_RS07215 0.57 +0.9
1,518,319 - BWI76_RS07215 0.58 -0.2
1,518,335 - BWI76_RS07215 0.59 -0.3
1,518,444 - BWI76_RS07215 0.72 +0.3
1,518,478 - BWI76_RS07215 0.76 +0.6
1,518,532 + BWI76_RS07215 0.82 +1.2
1,518,535 - BWI76_RS07215 0.82 +0.2
1,518,535 - BWI76_RS07215 0.82 +1.5
1,518,540 - BWI76_RS07215 0.83 +0.9
1,518,597 + -0.5
1,518,688 - -0.5
1,518,697 + +0.7
1,518,898 + +0.3
1,518,943 + +1.1
1,518,985 - BWI76_RS07220 0.13 -1.5
1,519,007 - BWI76_RS07220 0.15 -0.1
1,519,056 + BWI76_RS07220 0.20 -0.3
1,519,206 + BWI76_RS07220 0.34 +1.5
1,519,337 - BWI76_RS07220 0.47 -0.4
1,519,443 - BWI76_RS07220 0.57 -1.5
1,519,466 - BWI76_RS07220 0.59 -0.2
1,519,566 + BWI76_RS07220 0.69 -0.9
1,519,901 - +0.5
1,519,990 + -1.1
1,520,042 - BWI76_RS07225 0.12 -1.0
1,520,222 + BWI76_RS07225 0.30 +0.1
1,520,230 - BWI76_RS07225 0.30 +1.1
1,520,485 - BWI76_RS07225 0.56 +0.8

Or see this region's nucleotide sequence