Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27145

Experiment: KLEB31 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27140 and BWI76_RS27145 are separated by 95 nucleotidesBWI76_RS27145 and BWI76_RS27150 are separated by 91 nucleotides BWI76_RS27140: BWI76_RS27140 - L-selenocysteinyl-tRNA(Sec) synthase, at 5,633,781 to 5,635,169 _RS27140 BWI76_RS27145: BWI76_RS27145 - glutathione S-transferase, at 5,635,265 to 5,635,873 _RS27145 BWI76_RS27150: BWI76_RS27150 - secretion protein HlyD, at 5,635,965 to 5,637,101 _RS27150 Position (kb) 5635 5636Strain fitness (log2 ratio) -2 -1 0 1 2at 5634.274 kb on - strand, within BWI76_RS27140at 5634.360 kb on + strand, within BWI76_RS27140at 5634.490 kb on - strand, within BWI76_RS27140at 5634.586 kb on + strand, within BWI76_RS27140at 5634.904 kb on + strand, within BWI76_RS27140at 5634.991 kb on - strand, within BWI76_RS27140at 5635.063 kb on + strandat 5635.288 kb on + strandat 5635.424 kb on - strand, within BWI76_RS27145at 5635.426 kb on + strand, within BWI76_RS27145at 5635.434 kb on - strand, within BWI76_RS27145at 5635.434 kb on - strand, within BWI76_RS27145at 5635.468 kb on + strand, within BWI76_RS27145at 5635.476 kb on - strand, within BWI76_RS27145at 5635.476 kb on - strand, within BWI76_RS27145at 5635.476 kb on - strand, within BWI76_RS27145at 5635.617 kb on + strand, within BWI76_RS27145at 5635.625 kb on - strand, within BWI76_RS27145at 5635.660 kb on + strand, within BWI76_RS27145at 5635.668 kb on - strand, within BWI76_RS27145at 5635.668 kb on - strand, within BWI76_RS27145at 5635.750 kb on + strand, within BWI76_RS27145at 5635.758 kb on + strand, within BWI76_RS27145at 5635.897 kb on + strandat 5635.899 kb on + strandat 5635.944 kb on + strandat 5636.107 kb on + strand, within BWI76_RS27150at 5636.114 kb on + strand, within BWI76_RS27150at 5636.114 kb on + strand, within BWI76_RS27150at 5636.155 kb on - strand, within BWI76_RS27150at 5636.278 kb on + strand, within BWI76_RS27150at 5636.282 kb on + strand, within BWI76_RS27150at 5636.290 kb on - strand, within BWI76_RS27150at 5636.486 kb on + strandat 5636.492 kb on - strand, within BWI76_RS27150at 5636.494 kb on - strand, within BWI76_RS27150at 5636.539 kb on - strand, within BWI76_RS27150at 5636.555 kb on + strand, within BWI76_RS27150at 5636.671 kb on + strand, within BWI76_RS27150at 5636.671 kb on + strand, within BWI76_RS27150at 5636.679 kb on - strand, within BWI76_RS27150at 5636.679 kb on - strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.710 kb on + strand, within BWI76_RS27150at 5636.715 kb on + strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.718 kb on - strand, within BWI76_RS27150at 5636.723 kb on - strand, within BWI76_RS27150at 5636.724 kb on - strand, within BWI76_RS27150at 5636.724 kb on - strand, within BWI76_RS27150at 5636.745 kb on - strand, within BWI76_RS27150at 5636.746 kb on + strand, within BWI76_RS27150at 5636.755 kb on - strand, within BWI76_RS27150at 5636.760 kb on - strand, within BWI76_RS27150at 5636.760 kb on - strand, within BWI76_RS27150at 5636.773 kb on + strand, within BWI76_RS27150at 5636.773 kb on + strand, within BWI76_RS27150at 5636.773 kb on + strand, within BWI76_RS27150at 5636.780 kb on + strand, within BWI76_RS27150at 5636.780 kb on + strand, within BWI76_RS27150at 5636.782 kb on - strand, within BWI76_RS27150at 5636.785 kb on + strand, within BWI76_RS27150at 5636.787 kb on - strand, within BWI76_RS27150at 5636.788 kb on - strand, within BWI76_RS27150at 5636.793 kb on - strand, within BWI76_RS27150at 5636.794 kb on + strand, within BWI76_RS27150at 5636.794 kb on + strand, within BWI76_RS27150at 5636.799 kb on + strandat 5636.802 kb on - strand, within BWI76_RS27150at 5636.821 kb on + strand, within BWI76_RS27150at 5636.826 kb on + strand, within BWI76_RS27150at 5636.826 kb on + strand, within BWI76_RS27150at 5636.829 kb on - strand, within BWI76_RS27150at 5636.829 kb on - strand, within BWI76_RS27150at 5636.846 kb on - strand, within BWI76_RS27150at 5636.850 kb on - strand, within BWI76_RS27150at 5636.855 kb on + strand, within BWI76_RS27150at 5636.859 kb on + strand, within BWI76_RS27150at 5636.859 kb on + strand, within BWI76_RS27150at 5636.865 kb on + strand, within BWI76_RS27150at 5636.867 kb on - strand, within BWI76_RS27150at 5636.867 kb on - strand, within BWI76_RS27150at 5636.867 kb on - strand, within BWI76_RS27150at 5636.868 kb on - strand, within BWI76_RS27150at 5636.868 kb on - strand, within BWI76_RS27150at 5636.873 kb on - strand, within BWI76_RS27150

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB31 MOI 1
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5,634,274 - BWI76_RS27140 0.35 -1.7
5,634,360 + BWI76_RS27140 0.42 -2.0
5,634,490 - BWI76_RS27140 0.51 -0.8
5,634,586 + BWI76_RS27140 0.58 -0.5
5,634,904 + BWI76_RS27140 0.81 -0.3
5,634,991 - BWI76_RS27140 0.87 +0.4
5,635,063 + +0.6
5,635,288 + -1.6
5,635,424 - BWI76_RS27145 0.26 +0.7
5,635,426 + BWI76_RS27145 0.26 +0.4
5,635,434 - BWI76_RS27145 0.28 -0.2
5,635,434 - BWI76_RS27145 0.28 +0.6
5,635,468 + BWI76_RS27145 0.33 +2.2
5,635,476 - BWI76_RS27145 0.35 +0.4
5,635,476 - BWI76_RS27145 0.35 +0.0
5,635,476 - BWI76_RS27145 0.35 +0.6
5,635,617 + BWI76_RS27145 0.58 +0.9
5,635,625 - BWI76_RS27145 0.59 -0.1
5,635,660 + BWI76_RS27145 0.65 +1.3
5,635,668 - BWI76_RS27145 0.66 -1.4
5,635,668 - BWI76_RS27145 0.66 +0.8
5,635,750 + BWI76_RS27145 0.80 +1.3
5,635,758 + BWI76_RS27145 0.81 +0.0
5,635,897 + -1.1
5,635,899 + +0.2
5,635,944 + +0.7
5,636,107 + BWI76_RS27150 0.12 +0.2
5,636,114 + BWI76_RS27150 0.13 +1.1
5,636,114 + BWI76_RS27150 0.13 +2.0
5,636,155 - BWI76_RS27150 0.17 -1.3
5,636,278 + BWI76_RS27150 0.28 -0.2
5,636,282 + BWI76_RS27150 0.28 -1.0
5,636,290 - BWI76_RS27150 0.29 +0.3
5,636,486 + +0.0
5,636,492 - BWI76_RS27150 0.46 +2.0
5,636,494 - BWI76_RS27150 0.47 +0.5
5,636,539 - BWI76_RS27150 0.50 -0.2
5,636,555 + BWI76_RS27150 0.52 -1.2
5,636,671 + BWI76_RS27150 0.62 -1.3
5,636,671 + BWI76_RS27150 0.62 +0.6
5,636,679 - BWI76_RS27150 0.63 -0.4
5,636,679 - BWI76_RS27150 0.63 +0.8
5,636,710 + BWI76_RS27150 0.66 +0.6
5,636,710 + BWI76_RS27150 0.66 -0.2
5,636,710 + BWI76_RS27150 0.66 +0.4
5,636,710 + BWI76_RS27150 0.66 -0.1
5,636,710 + BWI76_RS27150 0.66 -1.0
5,636,710 + BWI76_RS27150 0.66 -0.1
5,636,710 + BWI76_RS27150 0.66 -0.6
5,636,710 + BWI76_RS27150 0.66 +0.3
5,636,710 + BWI76_RS27150 0.66 -0.1
5,636,710 + BWI76_RS27150 0.66 -2.0
5,636,710 + BWI76_RS27150 0.66 -1.5
5,636,710 + BWI76_RS27150 0.66 +0.1
5,636,710 + BWI76_RS27150 0.66 +1.9
5,636,710 + BWI76_RS27150 0.66 -0.2
5,636,710 + BWI76_RS27150 0.66 -1.0
5,636,710 + BWI76_RS27150 0.66 +1.6
5,636,715 + BWI76_RS27150 0.66 -0.4
5,636,718 - BWI76_RS27150 0.66 -0.1
5,636,718 - BWI76_RS27150 0.66 +0.9
5,636,718 - BWI76_RS27150 0.66 +0.2
5,636,718 - BWI76_RS27150 0.66 -2.0
5,636,718 - BWI76_RS27150 0.66 -0.7
5,636,718 - BWI76_RS27150 0.66 -1.2
5,636,718 - BWI76_RS27150 0.66 +0.4
5,636,718 - BWI76_RS27150 0.66 -0.7
5,636,718 - BWI76_RS27150 0.66 +0.1
5,636,718 - BWI76_RS27150 0.66 +1.5
5,636,718 - BWI76_RS27150 0.66 +0.4
5,636,718 - BWI76_RS27150 0.66 +0.8
5,636,718 - BWI76_RS27150 0.66 -1.6
5,636,718 - BWI76_RS27150 0.66 -1.7
5,636,718 - BWI76_RS27150 0.66 -0.6
5,636,718 - BWI76_RS27150 0.66 +2.6
5,636,718 - BWI76_RS27150 0.66 -1.8
5,636,723 - BWI76_RS27150 0.67 -0.2
5,636,724 - BWI76_RS27150 0.67 +0.6
5,636,724 - BWI76_RS27150 0.67 -0.2
5,636,745 - BWI76_RS27150 0.69 +1.6
5,636,746 + BWI76_RS27150 0.69 -1.4
5,636,755 - BWI76_RS27150 0.69 +1.0
5,636,760 - BWI76_RS27150 0.70 +2.5
5,636,760 - BWI76_RS27150 0.70 +2.0
5,636,773 + BWI76_RS27150 0.71 -1.8
5,636,773 + BWI76_RS27150 0.71 +0.2
5,636,773 + BWI76_RS27150 0.71 +0.4
5,636,780 + BWI76_RS27150 0.72 -0.8
5,636,780 + BWI76_RS27150 0.72 -0.7
5,636,782 - BWI76_RS27150 0.72 +0.1
5,636,785 + BWI76_RS27150 0.72 +1.2
5,636,787 - BWI76_RS27150 0.72 +1.1
5,636,788 - BWI76_RS27150 0.72 +0.4
5,636,793 - BWI76_RS27150 0.73 -0.1
5,636,794 + BWI76_RS27150 0.73 -0.7
5,636,794 + BWI76_RS27150 0.73 -1.2
5,636,799 + +1.5
5,636,802 - BWI76_RS27150 0.74 +0.5
5,636,821 + BWI76_RS27150 0.75 +0.0
5,636,826 + BWI76_RS27150 0.76 -0.2
5,636,826 + BWI76_RS27150 0.76 +0.4
5,636,829 - BWI76_RS27150 0.76 -0.2
5,636,829 - BWI76_RS27150 0.76 +0.1
5,636,846 - BWI76_RS27150 0.77 +1.7
5,636,850 - BWI76_RS27150 0.78 -0.4
5,636,855 + BWI76_RS27150 0.78 -0.4
5,636,859 + BWI76_RS27150 0.79 -1.2
5,636,859 + BWI76_RS27150 0.79 +0.4
5,636,865 + BWI76_RS27150 0.79 -0.5
5,636,867 - BWI76_RS27150 0.79 +1.0
5,636,867 - BWI76_RS27150 0.79 -0.2
5,636,867 - BWI76_RS27150 0.79 -0.1
5,636,868 - BWI76_RS27150 0.79 +0.8
5,636,868 - BWI76_RS27150 0.79 -2.7
5,636,873 - BWI76_RS27150 0.80 +0.4

Or see this region's nucleotide sequence