Experiment: KLEB31 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25500 and BWI76_RS25505 are separated by 305 nucleotides BWI76_RS25505 and BWI76_RS25510 are separated by 219 nucleotides
BWI76_RS25500: BWI76_RS25500 - rod shape-determining protein, at 5,300,504 to 5,301,547
_RS25500
BWI76_RS25505: BWI76_RS25505 - RNase E specificity factor CsrD, at 5,301,853 to 5,303,793
_RS25505
BWI76_RS25510: BWI76_RS25510 - oxidoreductase, at 5,304,013 to 5,304,987
_RS25510
Position (kb) 5301
5302
5303
5304 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 5301.849 kb on - strand at 5302.026 kb on - strand at 5302.031 kb on - strand at 5302.148 kb on - strand, within BWI76_RS25505 at 5302.267 kb on + strand, within BWI76_RS25505 at 5302.590 kb on + strand, within BWI76_RS25505 at 5302.634 kb on - strand, within BWI76_RS25505 at 5302.810 kb on - strand, within BWI76_RS25505 at 5302.946 kb on + strand, within BWI76_RS25505 at 5302.946 kb on + strand, within BWI76_RS25505 at 5303.224 kb on + strand, within BWI76_RS25505 at 5303.232 kb on - strand, within BWI76_RS25505 at 5303.386 kb on + strand, within BWI76_RS25505 at 5303.423 kb on + strand, within BWI76_RS25505 at 5303.530 kb on + strand, within BWI76_RS25505 at 5303.538 kb on - strand, within BWI76_RS25505 at 5303.538 kb on - strand at 5303.624 kb on - strand at 5303.899 kb on + strand at 5303.969 kb on - strand at 5303.996 kb on + strand at 5304.112 kb on + strand, within BWI76_RS25510 at 5304.139 kb on - strand, within BWI76_RS25510 at 5304.248 kb on - strand, within BWI76_RS25510 at 5304.364 kb on - strand, within BWI76_RS25510 at 5304.468 kb on - strand, within BWI76_RS25510 at 5304.756 kb on + strand, within BWI76_RS25510
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB31 MOI 1 remove 5,301,849 - -0.0 5,302,026 - +1.7 5,302,031 - +3.5 5,302,148 - BWI76_RS25505 0.15 +1.8 5,302,267 + BWI76_RS25505 0.21 -0.4 5,302,590 + BWI76_RS25505 0.38 +1.1 5,302,634 - BWI76_RS25505 0.40 +1.8 5,302,810 - BWI76_RS25505 0.49 -0.1 5,302,946 + BWI76_RS25505 0.56 +1.6 5,302,946 + BWI76_RS25505 0.56 +2.0 5,303,224 + BWI76_RS25505 0.71 +3.0 5,303,232 - BWI76_RS25505 0.71 +2.5 5,303,386 + BWI76_RS25505 0.79 +2.3 5,303,423 + BWI76_RS25505 0.81 +2.4 5,303,530 + BWI76_RS25505 0.86 +2.6 5,303,538 - BWI76_RS25505 0.87 +3.1 5,303,538 - +5.6 5,303,624 - +2.0 5,303,899 + +3.4 5,303,969 - +0.8 5,303,996 + +1.6 5,304,112 + BWI76_RS25510 0.10 -0.4 5,304,139 - BWI76_RS25510 0.13 +0.5 5,304,248 - BWI76_RS25510 0.24 -1.3 5,304,364 - BWI76_RS25510 0.36 -0.0 5,304,468 - BWI76_RS25510 0.47 +0.1 5,304,756 + BWI76_RS25510 0.76 +0.8
Or see this region's nucleotide sequence