Experiment: KLEB31 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18230 and BWI76_RS18235 overlap by 26 nucleotides BWI76_RS18235 and BWI76_RS18240 are separated by 159 nucleotides BWI76_RS18240 and BWI76_RS18245 are separated by 14 nucleotides
BWI76_RS18230: BWI76_RS18230 - trehalose-6-phosphate synthase, at 3,787,690 to 3,789,114
_RS18230
BWI76_RS18235: BWI76_RS18235 - trehalose-phosphatase, at 3,789,089 to 3,789,892
_RS18235
BWI76_RS18240: BWI76_RS18240 - L-arabinose ABC transporter permease AraH, at 3,790,052 to 3,791,032
_RS18240
BWI76_RS18245: BWI76_RS18245 - L-arabinose transporter ATP-binding protein, at 3,791,047 to 3,792,561
_RS18245
Position (kb)
3790
3791
3792 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3789.109 kb on + strand at 3789.429 kb on + strand, within BWI76_RS18235 at 3789.542 kb on - strand, within BWI76_RS18235 at 3789.645 kb on - strand, within BWI76_RS18235 at 3789.754 kb on + strand, within BWI76_RS18235 at 3789.811 kb on - strand, within BWI76_RS18235 at 3789.961 kb on - strand at 3790.092 kb on - strand at 3790.596 kb on + strand, within BWI76_RS18240 at 3790.603 kb on - strand, within BWI76_RS18240 at 3791.010 kb on - strand at 3791.276 kb on - strand, within BWI76_RS18245 at 3791.276 kb on - strand, within BWI76_RS18245 at 3791.298 kb on + strand, within BWI76_RS18245 at 3791.303 kb on + strand, within BWI76_RS18245 at 3791.306 kb on - strand, within BWI76_RS18245 at 3791.387 kb on - strand, within BWI76_RS18245 at 3791.438 kb on + strand, within BWI76_RS18245 at 3791.446 kb on + strand, within BWI76_RS18245 at 3791.555 kb on - strand, within BWI76_RS18245 at 3791.555 kb on - strand, within BWI76_RS18245 at 3791.567 kb on - strand, within BWI76_RS18245 at 3791.684 kb on + strand, within BWI76_RS18245 at 3791.909 kb on + strand, within BWI76_RS18245
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB31 MOI 1 remove 3,789,109 + -0.5 3,789,429 + BWI76_RS18235 0.42 -0.1 3,789,542 - BWI76_RS18235 0.56 +2.9 3,789,645 - BWI76_RS18235 0.69 -1.2 3,789,754 + BWI76_RS18235 0.83 -2.3 3,789,811 - BWI76_RS18235 0.90 +0.6 3,789,961 - +0.3 3,790,092 - -0.1 3,790,596 + BWI76_RS18240 0.55 +1.4 3,790,603 - BWI76_RS18240 0.56 +1.1 3,791,010 - +2.3 3,791,276 - BWI76_RS18245 0.15 +0.8 3,791,276 - BWI76_RS18245 0.15 -0.6 3,791,298 + BWI76_RS18245 0.17 -0.0 3,791,303 + BWI76_RS18245 0.17 +3.3 3,791,306 - BWI76_RS18245 0.17 -0.2 3,791,387 - BWI76_RS18245 0.22 -0.8 3,791,438 + BWI76_RS18245 0.26 +0.8 3,791,446 + BWI76_RS18245 0.26 +0.6 3,791,555 - BWI76_RS18245 0.34 +0.4 3,791,555 - BWI76_RS18245 0.34 -0.2 3,791,567 - BWI76_RS18245 0.34 +0.7 3,791,684 + BWI76_RS18245 0.42 -2.4 3,791,909 + BWI76_RS18245 0.57 +0.3
Or see this region's nucleotide sequence