Experiment: KLEB31 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17360 and BWI76_RS17365 overlap by 1 nucleotides BWI76_RS17365 and BWI76_RS17370 are separated by 9 nucleotides BWI76_RS17370 and BWI76_RS17375 are separated by 10 nucleotides
BWI76_RS17360: BWI76_RS17360 - nitrate reductase, at 3,598,066 to 3,600,666
_RS17360
BWI76_RS17365: BWI76_RS17365 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 3,600,666 to 3,604,736
_RS17365
BWI76_RS17370: BWI76_RS17370 - nitrate transporter NasD, at 3,604,746 to 3,605,534
_RS17370
BWI76_RS17375: BWI76_RS17375 - nitrate ABC transporter, permease protein, at 3,605,545 to 3,606,429
_RS17375
Position (kb)
3600
3601
3602
3603
3604
3605 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3599.693 kb on + strand, within BWI76_RS17360 at 3599.826 kb on + strand, within BWI76_RS17360 at 3599.923 kb on + strand, within BWI76_RS17360 at 3600.207 kb on - strand, within BWI76_RS17360 at 3600.218 kb on - strand, within BWI76_RS17360 at 3601.110 kb on + strand, within BWI76_RS17365 at 3601.270 kb on + strand, within BWI76_RS17365 at 3601.567 kb on - strand, within BWI76_RS17365 at 3601.733 kb on + strand, within BWI76_RS17365 at 3601.962 kb on + strand, within BWI76_RS17365 at 3602.039 kb on - strand, within BWI76_RS17365 at 3602.407 kb on - strand, within BWI76_RS17365 at 3602.766 kb on + strand, within BWI76_RS17365 at 3602.883 kb on + strand, within BWI76_RS17365 at 3603.314 kb on + strand, within BWI76_RS17365 at 3603.314 kb on + strand, within BWI76_RS17365 at 3603.423 kb on - strand, within BWI76_RS17365 at 3603.680 kb on + strand, within BWI76_RS17365 at 3603.750 kb on - strand, within BWI76_RS17365 at 3604.045 kb on - strand, within BWI76_RS17365 at 3604.315 kb on - strand, within BWI76_RS17365 at 3604.466 kb on - strand at 3604.807 kb on - strand at 3605.341 kb on + strand, within BWI76_RS17370 at 3605.452 kb on - strand, within BWI76_RS17370
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB31 MOI 1 remove 3,599,693 + BWI76_RS17360 0.63 +1.1 3,599,826 + BWI76_RS17360 0.68 -0.2 3,599,923 + BWI76_RS17360 0.71 +0.8 3,600,207 - BWI76_RS17360 0.82 -0.7 3,600,218 - BWI76_RS17360 0.83 +4.3 3,601,110 + BWI76_RS17365 0.11 -0.1 3,601,270 + BWI76_RS17365 0.15 -0.8 3,601,567 - BWI76_RS17365 0.22 +0.6 3,601,733 + BWI76_RS17365 0.26 -0.2 3,601,962 + BWI76_RS17365 0.32 +0.4 3,602,039 - BWI76_RS17365 0.34 +0.6 3,602,407 - BWI76_RS17365 0.43 +1.1 3,602,766 + BWI76_RS17365 0.52 +1.0 3,602,883 + BWI76_RS17365 0.54 +0.6 3,603,314 + BWI76_RS17365 0.65 -0.3 3,603,314 + BWI76_RS17365 0.65 -0.2 3,603,423 - BWI76_RS17365 0.68 +0.2 3,603,680 + BWI76_RS17365 0.74 -0.2 3,603,750 - BWI76_RS17365 0.76 +0.5 3,604,045 - BWI76_RS17365 0.83 -0.3 3,604,315 - BWI76_RS17365 0.90 +0.1 3,604,466 - -0.9 3,604,807 - +0.4 3,605,341 + BWI76_RS17370 0.75 -0.7 3,605,452 - BWI76_RS17370 0.89 -0.6
Or see this region's nucleotide sequence