Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04920

Experiment: KLEB31 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS04910 and BWI76_RS04915 are separated by 175 nucleotidesBWI76_RS04915 and BWI76_RS04920 are separated by 31 nucleotidesBWI76_RS04920 and BWI76_RS04925 are separated by 14 nucleotides BWI76_RS04910: BWI76_RS04910 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,029,429 to 1,032,047 _RS04910 BWI76_RS04915: BWI76_RS04915 - hypothetical protein, at 1,032,223 to 1,032,585 _RS04915 BWI76_RS04920: BWI76_RS04920 - S-adenosylmethionine decarboxylase, at 1,032,617 to 1,033,411 _RS04920 BWI76_RS04925: BWI76_RS04925 - spermidine synthase, at 1,033,426 to 1,034,289 _RS04925 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1032.184 kb on + strandat 1032.320 kb on + strand, within BWI76_RS04915at 1032.326 kb on + strand, within BWI76_RS04915at 1032.367 kb on + strand, within BWI76_RS04915at 1032.367 kb on + strand, within BWI76_RS04915at 1032.436 kb on + strand, within BWI76_RS04915at 1032.587 kb on - strandat 1032.614 kb on + strandat 1032.614 kb on + strandat 1032.686 kb on - strandat 1032.736 kb on - strand, within BWI76_RS04920at 1032.744 kb on - strand, within BWI76_RS04920at 1032.809 kb on + strand, within BWI76_RS04920at 1032.842 kb on + strand, within BWI76_RS04920at 1032.927 kb on - strand, within BWI76_RS04920at 1032.995 kb on + strand, within BWI76_RS04920at 1033.156 kb on + strand, within BWI76_RS04920at 1033.321 kb on + strand, within BWI76_RS04920at 1033.428 kb on + strandat 1033.429 kb on - strandat 1033.450 kb on + strandat 1033.594 kb on + strand, within BWI76_RS04925at 1033.602 kb on - strand, within BWI76_RS04925at 1033.653 kb on + strand, within BWI76_RS04925at 1033.717 kb on - strand, within BWI76_RS04925at 1033.722 kb on - strand, within BWI76_RS04925at 1033.874 kb on + strand, within BWI76_RS04925at 1034.079 kb on + strand, within BWI76_RS04925at 1034.087 kb on - strand, within BWI76_RS04925at 1034.231 kb on + strandat 1034.278 kb on + strandat 1034.360 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB31 MOI 1
remove
1,032,184 + -0.1
1,032,320 + BWI76_RS04915 0.27 -0.8
1,032,326 + BWI76_RS04915 0.28 +1.5
1,032,367 + BWI76_RS04915 0.40 -0.4
1,032,367 + BWI76_RS04915 0.40 -1.3
1,032,436 + BWI76_RS04915 0.59 -0.5
1,032,587 - -3.1
1,032,614 + +1.0
1,032,614 + +1.4
1,032,686 - -0.2
1,032,736 - BWI76_RS04920 0.15 +1.8
1,032,744 - BWI76_RS04920 0.16 +0.5
1,032,809 + BWI76_RS04920 0.24 -1.2
1,032,842 + BWI76_RS04920 0.28 +0.4
1,032,927 - BWI76_RS04920 0.39 +1.2
1,032,995 + BWI76_RS04920 0.48 +0.3
1,033,156 + BWI76_RS04920 0.68 -0.4
1,033,321 + BWI76_RS04920 0.89 -0.5
1,033,428 + +1.3
1,033,429 - +0.6
1,033,450 + +0.9
1,033,594 + BWI76_RS04925 0.19 -1.0
1,033,602 - BWI76_RS04925 0.20 -0.3
1,033,653 + BWI76_RS04925 0.26 +2.5
1,033,717 - BWI76_RS04925 0.34 +0.7
1,033,722 - BWI76_RS04925 0.34 +1.4
1,033,874 + BWI76_RS04925 0.52 +0.8
1,034,079 + BWI76_RS04925 0.76 +0.3
1,034,087 - BWI76_RS04925 0.77 +0.6
1,034,231 + -0.8
1,034,278 + -1.2
1,034,360 - -0.3

Or see this region's nucleotide sequence