Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03555

Experiment: KLEB31 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03545 and BWI76_RS03550 are separated by 17 nucleotidesBWI76_RS03550 and BWI76_RS03555 are separated by 3 nucleotidesBWI76_RS03555 and BWI76_RS03560 are separated by 12 nucleotidesBWI76_RS03560 and BWI76_RS03565 overlap by 4 nucleotides BWI76_RS03545: BWI76_RS03545 - QacE family quaternary ammonium compound efflux SMR transporter, at 735,914 to 736,243 _RS03545 BWI76_RS03550: BWI76_RS03550 - QacE family quaternary ammonium compound efflux SMR transporter, at 736,261 to 736,680 _RS03550 BWI76_RS03555: BWI76_RS03555 - hypothetical protein, at 736,684 to 737,385 _RS03555 BWI76_RS03560: BWI76_RS03560 - propanediol utilization phosphotransacylase, at 737,398 to 738,018 _RS03560 BWI76_RS03565: BWI76_RS03565 - BMC domain-containing protein, at 738,015 to 738,443 _RS03565 Position (kb) 736 737 738Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 735.688 kb on + strandat 735.697 kb on - strandat 735.770 kb on + strandat 735.803 kb on + strandat 735.806 kb on + strandat 735.827 kb on - strandat 735.880 kb on + strandat 735.912 kb on + strandat 735.912 kb on + strandat 735.913 kb on + strandat 735.914 kb on - strandat 735.920 kb on - strandat 735.964 kb on - strand, within BWI76_RS03545at 735.964 kb on - strand, within BWI76_RS03545at 735.974 kb on - strand, within BWI76_RS03545at 736.036 kb on + strand, within BWI76_RS03545at 736.038 kb on + strand, within BWI76_RS03545at 736.075 kb on + strand, within BWI76_RS03545at 736.075 kb on + strand, within BWI76_RS03545at 736.094 kb on + strand, within BWI76_RS03545at 736.102 kb on - strand, within BWI76_RS03545at 736.104 kb on + strand, within BWI76_RS03545at 736.112 kb on - strand, within BWI76_RS03545at 736.149 kb on + strand, within BWI76_RS03545at 736.457 kb on - strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.491 kb on - strand, within BWI76_RS03550at 736.491 kb on - strand, within BWI76_RS03550at 736.509 kb on - strand, within BWI76_RS03550at 736.548 kb on - strand, within BWI76_RS03550at 736.608 kb on + strand, within BWI76_RS03550at 736.769 kb on + strand, within BWI76_RS03555at 736.822 kb on - strand, within BWI76_RS03555at 736.958 kb on + strand, within BWI76_RS03555at 736.958 kb on + strand, within BWI76_RS03555at 737.080 kb on - strand, within BWI76_RS03555at 737.148 kb on + strand, within BWI76_RS03555at 737.150 kb on + strand, within BWI76_RS03555at 737.150 kb on + strand, within BWI76_RS03555at 737.244 kb on + strand, within BWI76_RS03555at 737.325 kb on - strandat 737.408 kb on + strandat 737.746 kb on - strand, within BWI76_RS03560at 737.830 kb on + strand, within BWI76_RS03560at 737.830 kb on + strand, within BWI76_RS03560at 737.838 kb on - strand, within BWI76_RS03560at 737.838 kb on - strand, within BWI76_RS03560at 737.890 kb on - strand, within BWI76_RS03560at 738.014 kb on - strandat 738.029 kb on - strandat 738.092 kb on + strand, within BWI76_RS03565at 738.179 kb on - strand, within BWI76_RS03565at 738.179 kb on - strand, within BWI76_RS03565at 738.209 kb on + strand, within BWI76_RS03565at 738.229 kb on + strand, within BWI76_RS03565at 738.292 kb on + strand, within BWI76_RS03565at 738.357 kb on + strand, within BWI76_RS03565

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB31 MOI 1
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735,688 + -1.8
735,697 - +0.4
735,770 + +1.0
735,803 + +0.9
735,806 + +1.5
735,827 - +1.0
735,880 + +0.3
735,912 + +0.2
735,912 + +0.1
735,913 + -1.1
735,914 - +0.1
735,920 - -0.5
735,964 - BWI76_RS03545 0.15 -1.3
735,964 - BWI76_RS03545 0.15 -3.9
735,974 - BWI76_RS03545 0.18 -2.8
736,036 + BWI76_RS03545 0.37 +2.2
736,038 + BWI76_RS03545 0.38 +0.0
736,075 + BWI76_RS03545 0.49 -0.3
736,075 + BWI76_RS03545 0.49 +1.2
736,094 + BWI76_RS03545 0.55 -2.0
736,102 - BWI76_RS03545 0.57 +2.0
736,104 + BWI76_RS03545 0.58 +0.0
736,112 - BWI76_RS03545 0.60 +2.4
736,149 + BWI76_RS03545 0.71 +2.3
736,457 - BWI76_RS03550 0.47 -0.7
736,478 + BWI76_RS03550 0.52 -0.4
736,478 + BWI76_RS03550 0.52 -1.1
736,478 + BWI76_RS03550 0.52 -1.1
736,491 - BWI76_RS03550 0.55 -1.3
736,491 - BWI76_RS03550 0.55 +0.4
736,509 - BWI76_RS03550 0.59 -0.9
736,548 - BWI76_RS03550 0.68 +0.3
736,608 + BWI76_RS03550 0.83 +1.2
736,769 + BWI76_RS03555 0.12 -0.2
736,822 - BWI76_RS03555 0.20 +1.0
736,958 + BWI76_RS03555 0.39 +0.0
736,958 + BWI76_RS03555 0.39 +1.0
737,080 - BWI76_RS03555 0.56 +0.6
737,148 + BWI76_RS03555 0.66 +1.4
737,150 + BWI76_RS03555 0.66 +2.1
737,150 + BWI76_RS03555 0.66 +0.2
737,244 + BWI76_RS03555 0.80 +0.9
737,325 - -0.4
737,408 + -3.4
737,746 - BWI76_RS03560 0.56 -2.5
737,830 + BWI76_RS03560 0.70 -1.2
737,830 + BWI76_RS03560 0.70 +1.3
737,838 - BWI76_RS03560 0.71 -0.5
737,838 - BWI76_RS03560 0.71 -1.2
737,890 - BWI76_RS03560 0.79 -0.9
738,014 - -0.5
738,029 - -1.3
738,092 + BWI76_RS03565 0.18 +1.3
738,179 - BWI76_RS03565 0.38 -0.3
738,179 - BWI76_RS03565 0.38 +0.7
738,209 + BWI76_RS03565 0.45 -0.4
738,229 + BWI76_RS03565 0.50 -0.1
738,292 + BWI76_RS03565 0.65 -0.0
738,357 + BWI76_RS03565 0.80 -1.7

Or see this region's nucleotide sequence