Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02810

Experiment: KLEB31 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS02805 and BWI76_RS02810 overlap by 14 nucleotidesBWI76_RS02810 and BWI76_RS02815 are separated by 44 nucleotides BWI76_RS02805: BWI76_RS02805 - sugar ABC transporter permease, at 572,805 to 573,830 _RS02805 BWI76_RS02810: BWI76_RS02810 - sugar ABC transporter permease YjfF, at 573,817 to 574,803 _RS02810 BWI76_RS02815: BWI76_RS02815 - fructose-bisphosphatase class I, at 574,848 to 575,846 _RS02815 Position (kb) 573 574 575Strain fitness (log2 ratio) -2 -1 0 1at 572.865 kb on - strandat 573.046 kb on + strand, within BWI76_RS02805at 573.263 kb on + strand, within BWI76_RS02805at 573.268 kb on + strand, within BWI76_RS02805at 573.526 kb on + strand, within BWI76_RS02805at 573.558 kb on + strand, within BWI76_RS02805at 573.881 kb on - strandat 574.280 kb on - strand, within BWI76_RS02810at 574.280 kb on - strand, within BWI76_RS02810at 574.549 kb on - strand, within BWI76_RS02810at 574.598 kb on + strand, within BWI76_RS02810at 574.690 kb on - strand, within BWI76_RS02810at 574.892 kb on - strandat 575.069 kb on + strand, within BWI76_RS02815at 575.351 kb on - strand, within BWI76_RS02815at 575.631 kb on - strand, within BWI76_RS02815at 575.769 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB31 MOI 1
remove
572,865 - +0.2
573,046 + BWI76_RS02805 0.23 -0.1
573,263 + BWI76_RS02805 0.45 +0.2
573,268 + BWI76_RS02805 0.45 +1.0
573,526 + BWI76_RS02805 0.70 -0.7
573,558 + BWI76_RS02805 0.73 -0.1
573,881 - +0.3
574,280 - BWI76_RS02810 0.47 -0.9
574,280 - BWI76_RS02810 0.47 -0.6
574,549 - BWI76_RS02810 0.74 -1.8
574,598 + BWI76_RS02810 0.79 -1.2
574,690 - BWI76_RS02810 0.88 +0.0
574,892 - -1.9
575,069 + BWI76_RS02815 0.22 -0.9
575,351 - BWI76_RS02815 0.50 +1.2
575,631 - BWI76_RS02815 0.78 -0.9
575,769 + +0.8

Or see this region's nucleotide sequence