Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18060

Experiment: KLEB30 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18050 and BWI76_RS18055 are separated by 16 nucleotidesBWI76_RS18055 and BWI76_RS18060 are separated by 4 nucleotidesBWI76_RS18060 and BWI76_RS18065 are separated by 135 nucleotidesBWI76_RS18065 and BWI76_RS18070 are separated by 78 nucleotides BWI76_RS18050: BWI76_RS18050 - hypothetical protein, at 3,751,721 to 3,752,059 _RS18050 BWI76_RS18055: BWI76_RS18055 - copper resistance protein D, at 3,752,076 to 3,752,945 _RS18055 BWI76_RS18060: BWI76_RS18060 - hypothetical protein, at 3,752,950 to 3,753,324 _RS18060 BWI76_RS18065: BWI76_RS18065 - DNA polymerase III subunit theta, at 3,753,460 to 3,753,690 _RS18065 BWI76_RS18070: BWI76_RS18070 - DNA polymerase III subunit epsilon, at 3,753,769 to 3,754,428 _RS18070 Position (kb) 3752 3753 3754Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3751.977 kb on - strand, within BWI76_RS18050at 3751.977 kb on - strand, within BWI76_RS18050at 3752.115 kb on - strandat 3752.163 kb on + strand, within BWI76_RS18055at 3752.617 kb on + strand, within BWI76_RS18055at 3752.929 kb on - strandat 3753.135 kb on - strand, within BWI76_RS18060at 3753.172 kb on + strand, within BWI76_RS18060at 3753.197 kb on - strand, within BWI76_RS18060at 3753.367 kb on - strandat 3753.402 kb on + strandat 3753.536 kb on + strand, within BWI76_RS18065at 3753.590 kb on + strandat 3754.286 kb on + strand, within BWI76_RS18070at 3754.287 kb on - strand, within BWI76_RS18070at 3754.293 kb on - strand, within BWI76_RS18070

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB30 MOI 1
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3,751,977 - BWI76_RS18050 0.76 -0.8
3,751,977 - BWI76_RS18050 0.76 +1.5
3,752,115 - +1.4
3,752,163 + BWI76_RS18055 0.10 -0.0
3,752,617 + BWI76_RS18055 0.62 -0.4
3,752,929 - -0.9
3,753,135 - BWI76_RS18060 0.49 -0.1
3,753,172 + BWI76_RS18060 0.59 -0.9
3,753,197 - BWI76_RS18060 0.66 -2.2
3,753,367 - +0.3
3,753,402 + +0.4
3,753,536 + BWI76_RS18065 0.33 +5.0
3,753,590 + +3.8
3,754,286 + BWI76_RS18070 0.78 -1.7
3,754,287 - BWI76_RS18070 0.78 +0.5
3,754,293 - BWI76_RS18070 0.79 -0.4

Or see this region's nucleotide sequence