Experiment: KLEB30 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18050 and BWI76_RS18055 are separated by 16 nucleotides BWI76_RS18055 and BWI76_RS18060 are separated by 4 nucleotides BWI76_RS18060 and BWI76_RS18065 are separated by 135 nucleotides BWI76_RS18065 and BWI76_RS18070 are separated by 78 nucleotides
BWI76_RS18050: BWI76_RS18050 - hypothetical protein, at 3,751,721 to 3,752,059
_RS18050
BWI76_RS18055: BWI76_RS18055 - copper resistance protein D, at 3,752,076 to 3,752,945
_RS18055
BWI76_RS18060: BWI76_RS18060 - hypothetical protein, at 3,752,950 to 3,753,324
_RS18060
BWI76_RS18065: BWI76_RS18065 - DNA polymerase III subunit theta, at 3,753,460 to 3,753,690
_RS18065
BWI76_RS18070: BWI76_RS18070 - DNA polymerase III subunit epsilon, at 3,753,769 to 3,754,428
_RS18070
Position (kb)
3752
3753
3754 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3751.977 kb on - strand, within BWI76_RS18050 at 3751.977 kb on - strand, within BWI76_RS18050 at 3752.115 kb on - strand at 3752.163 kb on + strand, within BWI76_RS18055 at 3752.617 kb on + strand, within BWI76_RS18055 at 3752.929 kb on - strand at 3753.135 kb on - strand, within BWI76_RS18060 at 3753.172 kb on + strand, within BWI76_RS18060 at 3753.197 kb on - strand, within BWI76_RS18060 at 3753.367 kb on - strand at 3753.402 kb on + strand at 3753.536 kb on + strand, within BWI76_RS18065 at 3753.590 kb on + strand at 3754.286 kb on + strand, within BWI76_RS18070 at 3754.287 kb on - strand, within BWI76_RS18070 at 3754.293 kb on - strand, within BWI76_RS18070
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB30 MOI 1 remove 3,751,977 - BWI76_RS18050 0.76 -0.8 3,751,977 - BWI76_RS18050 0.76 +1.5 3,752,115 - +1.4 3,752,163 + BWI76_RS18055 0.10 -0.0 3,752,617 + BWI76_RS18055 0.62 -0.4 3,752,929 - -0.9 3,753,135 - BWI76_RS18060 0.49 -0.1 3,753,172 + BWI76_RS18060 0.59 -0.9 3,753,197 - BWI76_RS18060 0.66 -2.2 3,753,367 - +0.3 3,753,402 + +0.4 3,753,536 + BWI76_RS18065 0.33 +5.0 3,753,590 + +3.8 3,754,286 + BWI76_RS18070 0.78 -1.7 3,754,287 - BWI76_RS18070 0.78 +0.5 3,754,293 - BWI76_RS18070 0.79 -0.4
Or see this region's nucleotide sequence