Experiment: KLEB30 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16940 and BWI76_RS16945 are separated by 79 nucleotides BWI76_RS16945 and BWI76_RS16950 are separated by 126 nucleotides BWI76_RS16950 and BWI76_RS16955 are separated by 26 nucleotides
BWI76_RS16940: BWI76_RS16940 - MFS transporter, at 3,512,796 to 3,514,115
_RS16940
BWI76_RS16945: BWI76_RS16945 - 4-hydroxyphenylpyruvate dioxygenase, at 3,514,195 to 3,516,048
_RS16945
BWI76_RS16950: BWI76_RS16950 - TetR family transcriptional regulator, at 3,516,175 to 3,516,813
_RS16950
BWI76_RS16955: BWI76_RS16955 - hypothetical protein, at 3,516,840 to 3,517,052
_RS16955
Position (kb)
3514
3515
3516
3517 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3513.503 kb on + strand, within BWI76_RS16940 at 3513.684 kb on - strand, within BWI76_RS16940 at 3513.762 kb on - strand, within BWI76_RS16940 at 3513.906 kb on + strand, within BWI76_RS16940 at 3513.956 kb on - strand, within BWI76_RS16940 at 3513.981 kb on + strand, within BWI76_RS16940 at 3514.156 kb on - strand at 3514.204 kb on + strand at 3515.508 kb on + strand, within BWI76_RS16945 at 3515.633 kb on + strand, within BWI76_RS16945 at 3515.641 kb on - strand, within BWI76_RS16945 at 3515.670 kb on - strand, within BWI76_RS16945 at 3516.302 kb on + strand, within BWI76_RS16950 at 3516.427 kb on + strand, within BWI76_RS16950 at 3516.469 kb on + strand, within BWI76_RS16950 at 3516.965 kb on + strand, within BWI76_RS16955
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB30 MOI 1 remove 3,513,503 + BWI76_RS16940 0.54 +1.1 3,513,684 - BWI76_RS16940 0.67 -0.2 3,513,762 - BWI76_RS16940 0.73 -0.4 3,513,906 + BWI76_RS16940 0.84 +0.3 3,513,956 - BWI76_RS16940 0.88 -0.2 3,513,981 + BWI76_RS16940 0.90 +0.9 3,514,156 - +0.2 3,514,204 + -2.2 3,515,508 + BWI76_RS16945 0.71 +2.4 3,515,633 + BWI76_RS16945 0.78 +2.0 3,515,641 - BWI76_RS16945 0.78 -0.5 3,515,670 - BWI76_RS16945 0.80 +0.5 3,516,302 + BWI76_RS16950 0.20 -2.5 3,516,427 + BWI76_RS16950 0.39 +0.1 3,516,469 + BWI76_RS16950 0.46 -0.8 3,516,965 + BWI76_RS16955 0.59 -1.5
Or see this region's nucleotide sequence