Experiment: KLEB30 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16870 and BWI76_RS16875 are separated by 107 nucleotides BWI76_RS16875 and BWI76_RS16880 are separated by 1 nucleotides BWI76_RS16880 and BWI76_RS16885 are separated by 300 nucleotides BWI76_RS16885 and BWI76_RS16890 are separated by 33 nucleotides
BWI76_RS16870: BWI76_RS16870 - LysR family transcriptional regulator, at 3,498,725 to 3,499,618
_RS16870
BWI76_RS16875: BWI76_RS16875 - putative type I cysteine dioxygenase, at 3,499,726 to 3,500,322
_RS16875
BWI76_RS16880: BWI76_RS16880 - GlpE family protein, at 3,500,324 to 3,501,904
_RS16880
BWI76_RS16885: BWI76_RS16885 - hypothetical protein, at 3,502,205 to 3,502,389
_RS16885
BWI76_RS16890: BWI76_RS16890 - hypothetical protein, at 3,502,423 to 3,503,157
_RS16890
Position (kb)
3500
3501
3502 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3499.376 kb on - strand, within BWI76_RS16870 at 3499.812 kb on + strand, within BWI76_RS16875 at 3499.991 kb on + strand, within BWI76_RS16875 at 3500.040 kb on - strand, within BWI76_RS16875 at 3500.097 kb on + strand, within BWI76_RS16875 at 3500.156 kb on + strand, within BWI76_RS16875 at 3500.170 kb on - strand at 3500.658 kb on - strand, within BWI76_RS16880 at 3500.753 kb on - strand, within BWI76_RS16880 at 3500.885 kb on + strand, within BWI76_RS16880 at 3501.077 kb on + strand, within BWI76_RS16880 at 3501.351 kb on + strand, within BWI76_RS16880 at 3501.675 kb on + strand, within BWI76_RS16880 at 3501.873 kb on - strand at 3501.896 kb on - strand at 3502.166 kb on - strand at 3502.434 kb on + strand at 3502.831 kb on - strand, within BWI76_RS16890
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB30 MOI 1 remove 3,499,376 - BWI76_RS16870 0.73 -0.0 3,499,812 + BWI76_RS16875 0.14 +0.8 3,499,991 + BWI76_RS16875 0.44 +0.2 3,500,040 - BWI76_RS16875 0.53 -1.4 3,500,097 + BWI76_RS16875 0.62 -0.2 3,500,156 + BWI76_RS16875 0.72 -0.3 3,500,170 - -0.8 3,500,658 - BWI76_RS16880 0.21 -3.0 3,500,753 - BWI76_RS16880 0.27 -1.4 3,500,885 + BWI76_RS16880 0.35 -0.1 3,501,077 + BWI76_RS16880 0.48 -0.1 3,501,351 + BWI76_RS16880 0.65 -0.9 3,501,675 + BWI76_RS16880 0.85 -2.0 3,501,873 - -0.7 3,501,896 - +2.2 3,502,166 - -0.0 3,502,434 + -0.0 3,502,831 - BWI76_RS16890 0.56 -0.7
Or see this region's nucleotide sequence