Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15245

Experiment: KLEB30 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15240 and BWI76_RS15245 are separated by 18 nucleotidesBWI76_RS15245 and BWI76_RS15250 are separated by 111 nucleotidesBWI76_RS15250 and BWI76_RS15255 are separated by 28 nucleotides BWI76_RS15240: BWI76_RS15240 - alcohol dehydrogenase, at 3,194,208 to 3,195,353 _RS15240 BWI76_RS15245: BWI76_RS15245 - dihydrodipicolinate synthase family protein, at 3,195,372 to 3,196,256 _RS15245 BWI76_RS15250: BWI76_RS15250 - tellurium resistance protein TerC, at 3,196,368 to 3,197,129 _RS15250 BWI76_RS15255: BWI76_RS15255 - hypothetical protein, at 3,197,158 to 3,198,330 _RS15255 Position (kb) 3195 3196 3197Strain fitness (log2 ratio) -1 0 1 2 3at 3194.389 kb on - strand, within BWI76_RS15240at 3194.419 kb on - strand, within BWI76_RS15240at 3194.522 kb on - strand, within BWI76_RS15240at 3194.658 kb on - strand, within BWI76_RS15240at 3195.052 kb on + strand, within BWI76_RS15240at 3195.225 kb on + strand, within BWI76_RS15240at 3195.356 kb on - strandat 3195.623 kb on - strand, within BWI76_RS15245at 3195.702 kb on - strand, within BWI76_RS15245at 3195.736 kb on - strand, within BWI76_RS15245at 3195.892 kb on - strand, within BWI76_RS15245at 3195.930 kb on - strand, within BWI76_RS15245at 3195.962 kb on + strand, within BWI76_RS15245at 3196.052 kb on + strand, within BWI76_RS15245at 3196.074 kb on - strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.085 kb on - strand, within BWI76_RS15245at 3196.088 kb on - strand, within BWI76_RS15245at 3196.098 kb on - strand, within BWI76_RS15245at 3196.173 kb on - strandat 3196.173 kb on - strandat 3196.186 kb on + strandat 3196.191 kb on + strandat 3196.194 kb on - strandat 3196.197 kb on + strandat 3196.198 kb on + strandat 3196.199 kb on - strandat 3196.204 kb on + strandat 3196.205 kb on - strandat 3196.205 kb on - strandat 3196.205 kb on - strandat 3196.212 kb on - strandat 3196.212 kb on - strandat 3196.212 kb on - strandat 3196.351 kb on + strandat 3196.533 kb on + strand, within BWI76_RS15250at 3197.100 kb on + strandat 3197.199 kb on + strandat 3197.205 kb on + strandat 3197.213 kb on - strandat 3197.224 kb on + strandat 3197.232 kb on + strandat 3197.232 kb on + strandat 3197.237 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB30 MOI 1
remove
3,194,389 - BWI76_RS15240 0.16 -0.7
3,194,419 - BWI76_RS15240 0.18 +0.4
3,194,522 - BWI76_RS15240 0.27 +0.6
3,194,658 - BWI76_RS15240 0.39 +0.9
3,195,052 + BWI76_RS15240 0.74 -0.2
3,195,225 + BWI76_RS15240 0.89 -1.7
3,195,356 - +0.2
3,195,623 - BWI76_RS15245 0.28 +1.5
3,195,702 - BWI76_RS15245 0.37 -0.2
3,195,736 - BWI76_RS15245 0.41 -1.1
3,195,892 - BWI76_RS15245 0.59 +0.2
3,195,930 - BWI76_RS15245 0.63 +0.1
3,195,962 + BWI76_RS15245 0.67 +3.2
3,196,052 + BWI76_RS15245 0.77 +0.5
3,196,074 - BWI76_RS15245 0.79 +1.8
3,196,077 + BWI76_RS15245 0.80 +1.2
3,196,077 + BWI76_RS15245 0.80 +0.3
3,196,077 + BWI76_RS15245 0.80 -0.3
3,196,077 + BWI76_RS15245 0.80 -0.7
3,196,077 + BWI76_RS15245 0.80 +1.3
3,196,085 - BWI76_RS15245 0.81 -1.4
3,196,088 - BWI76_RS15245 0.81 +1.7
3,196,098 - BWI76_RS15245 0.82 +1.0
3,196,173 - -0.9
3,196,173 - -0.3
3,196,186 + -0.7
3,196,191 + +0.1
3,196,194 - +0.4
3,196,197 + -0.9
3,196,198 + -1.4
3,196,199 - -0.0
3,196,204 + -0.7
3,196,205 - +0.2
3,196,205 - +1.1
3,196,205 - +0.2
3,196,212 - -0.3
3,196,212 - +0.6
3,196,212 - -1.7
3,196,351 + -0.4
3,196,533 + BWI76_RS15250 0.22 +0.9
3,197,100 + -0.7
3,197,199 + -0.3
3,197,205 + +0.2
3,197,213 - +0.9
3,197,224 + +0.8
3,197,232 + +2.1
3,197,232 + +0.8
3,197,237 + -0.1

Or see this region's nucleotide sequence