Experiment: KLEB30 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13885 and BWI76_RS13890 are separated by 157 nucleotides BWI76_RS13890 and BWI76_RS13895 overlap by 32 nucleotides BWI76_RS13895 and BWI76_RS13900 are separated by 104 nucleotides
BWI76_RS13885: BWI76_RS13885 - AraC family transcriptional regulator, at 2,896,677 to 2,897,489
_RS13885
BWI76_RS13890: BWI76_RS13890 - LysR family transcriptional regulator, at 2,897,647 to 2,898,552
_RS13890
BWI76_RS13895: BWI76_RS13895 - LysR family transcriptional regulator, at 2,898,521 to 2,899,426
_RS13895
BWI76_RS13900: BWI76_RS13900 - MFS transporter, at 2,899,531 to 2,900,694
_RS13900
Position (kb)
2897
2898
2899 Strain fitness (log2 ratio)
-2
-1
0
1 at 2896.708 kb on - strand at 2897.141 kb on + strand, within BWI76_RS13885 at 2897.906 kb on + strand, within BWI76_RS13890 at 2898.014 kb on - strand, within BWI76_RS13890 at 2898.036 kb on + strand, within BWI76_RS13890 at 2898.817 kb on - strand, within BWI76_RS13895 at 2899.146 kb on - strand, within BWI76_RS13895 at 2899.417 kb on - strand at 2899.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB30 MOI 1 remove 2,896,708 - -0.7 2,897,141 + BWI76_RS13885 0.57 -1.7 2,897,906 + BWI76_RS13890 0.29 -1.5 2,898,014 - BWI76_RS13890 0.41 -2.6 2,898,036 + BWI76_RS13890 0.43 -0.4 2,898,817 - BWI76_RS13895 0.33 +0.9 2,899,146 - BWI76_RS13895 0.69 +0.1 2,899,417 - -1.8 2,899,493 + +0.9
Or see this region's nucleotide sequence