Experiment: KLEB30 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02915 and BWI76_RS02920 are separated by 18 nucleotides BWI76_RS02920 and BWI76_RS02925 are separated by 25 nucleotides
BWI76_RS02915: BWI76_RS02915 - Hcp family T6SS protein Cts2H, at 595,729 to 596,214
_RS02915
BWI76_RS02920: BWI76_RS02920 - addiction module toxin RelE, at 596,233 to 596,379
_RS02920
BWI76_RS02925: BWI76_RS02925 - type IV secretion protein Rhs, at 596,405 to 598,123
_RS02925
Position (kb) 596
597 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 595.251 kb on - strand at 595.251 kb on - strand at 595.251 kb on - strand at 595.261 kb on - strand at 595.305 kb on + strand at 595.315 kb on + strand at 595.334 kb on + strand at 595.334 kb on - strand at 595.340 kb on - strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.452 kb on - strand at 595.452 kb on - strand at 595.500 kb on + strand at 595.508 kb on - strand at 595.508 kb on - strand at 595.545 kb on + strand at 595.545 kb on + strand at 595.545 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.554 kb on - strand at 595.554 kb on - strand at 595.554 kb on - strand at 595.598 kb on - strand at 595.612 kb on - strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.690 kb on + strand at 595.698 kb on - strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.708 kb on - strand at 595.708 kb on - strand at 595.718 kb on - strand at 595.720 kb on + strand at 595.720 kb on + strand at 595.722 kb on + strand at 595.765 kb on + strand at 595.765 kb on + strand at 595.774 kb on - strand at 595.776 kb on + strand at 595.784 kb on - strand, within BWI76_RS02915 at 595.814 kb on + strand at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.825 kb on - strand, within BWI76_RS02915 at 595.825 kb on - strand, within BWI76_RS02915 at 595.825 kb on - strand, within BWI76_RS02915 at 595.851 kb on + strand, within BWI76_RS02915 at 595.851 kb on + strand, within BWI76_RS02915 at 595.869 kb on - strand, within BWI76_RS02915 at 595.932 kb on + strand, within BWI76_RS02915 at 595.939 kb on + strand, within BWI76_RS02915 at 595.941 kb on + strand, within BWI76_RS02915 at 595.947 kb on - strand, within BWI76_RS02915 at 596.048 kb on + strand, within BWI76_RS02915 at 596.215 kb on + strand at 596.216 kb on + strand at 596.223 kb on - strand at 596.231 kb on - strand at 596.239 kb on - strand at 596.332 kb on + strand, within BWI76_RS02920 at 596.427 kb on + strand at 596.638 kb on + strand, within BWI76_RS02925 at 596.803 kb on - strand, within BWI76_RS02925 at 596.895 kb on + strand, within BWI76_RS02925 at 596.972 kb on + strand, within BWI76_RS02925 at 597.121 kb on + strand, within BWI76_RS02925 at 597.213 kb on + strand, within BWI76_RS02925 at 597.253 kb on - strand, within BWI76_RS02925 at 597.280 kb on + strand, within BWI76_RS02925 at 597.280 kb on + strand, within BWI76_RS02925
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB30 MOI 1 remove 595,251 - -0.8 595,251 - -2.4 595,251 - -0.3 595,261 - +0.0 595,305 + +0.7 595,315 + -1.3 595,334 + +2.6 595,334 - -1.4 595,340 - -0.2 595,444 + +1.6 595,444 + +1.6 595,444 + +0.1 595,444 + -1.8 595,444 + -0.7 595,452 - -0.8 595,452 - -1.4 595,500 + -1.2 595,508 - -2.0 595,508 - +0.4 595,545 + -0.2 595,545 + -0.2 595,545 + -0.1 595,546 + -0.3 595,546 + -1.8 595,546 + +0.3 595,546 + +0.1 595,546 + +0.9 595,546 + -1.3 595,546 + +1.9 595,554 - -0.6 595,554 - -0.8 595,554 - -0.6 595,598 - -0.2 595,612 - -0.8 595,623 + -0.8 595,623 + -0.8 595,623 + -1.8 595,623 + -0.7 595,623 + +0.8 595,680 + -1.9 595,680 + -1.3 595,680 + -0.6 595,680 + -0.2 595,680 + +1.4 595,680 + -0.4 595,680 + -0.5 595,690 + -0.4 595,698 - +1.8 595,700 + +0.2 595,700 + -0.1 595,700 + -0.1 595,700 + -0.5 595,700 + -0.5 595,700 + -0.7 595,708 - +2.5 595,708 - +0.7 595,718 - +1.1 595,720 + +1.2 595,720 + +0.6 595,722 + -0.6 595,765 + -0.3 595,765 + -1.3 595,774 - -0.2 595,776 + +0.7 595,784 - BWI76_RS02915 0.11 -1.3 595,814 + +1.6 595,817 + BWI76_RS02915 0.18 +0.2 595,817 + BWI76_RS02915 0.18 -1.4 595,817 + BWI76_RS02915 0.18 -0.1 595,817 + BWI76_RS02915 0.18 -1.5 595,817 + BWI76_RS02915 0.18 +1.6 595,825 - BWI76_RS02915 0.20 -1.1 595,825 - BWI76_RS02915 0.20 -0.4 595,825 - BWI76_RS02915 0.20 +0.6 595,851 + BWI76_RS02915 0.25 -0.0 595,851 + BWI76_RS02915 0.25 +3.8 595,869 - BWI76_RS02915 0.29 -0.9 595,932 + BWI76_RS02915 0.42 +0.2 595,939 + BWI76_RS02915 0.43 -0.2 595,941 + BWI76_RS02915 0.44 +2.5 595,947 - BWI76_RS02915 0.45 +0.4 596,048 + BWI76_RS02915 0.66 +2.6 596,215 + +2.3 596,216 + -0.3 596,223 - +1.3 596,231 - -0.6 596,239 - +0.8 596,332 + BWI76_RS02920 0.67 -0.9 596,427 + -0.2 596,638 + BWI76_RS02925 0.14 -0.2 596,803 - BWI76_RS02925 0.23 -0.2 596,895 + BWI76_RS02925 0.29 +1.1 596,972 + BWI76_RS02925 0.33 +0.7 597,121 + BWI76_RS02925 0.42 -1.5 597,213 + BWI76_RS02925 0.47 -1.5 597,253 - BWI76_RS02925 0.49 -1.5 597,280 + BWI76_RS02925 0.51 -0.5 597,280 + BWI76_RS02925 0.51 -0.9
Or see this region's nucleotide sequence