Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17660

Experiment: KLEB30 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17655 and BWI76_RS17660 are separated by 94 nucleotidesBWI76_RS17660 and BWI76_RS17665 overlap by 16 nucleotidesBWI76_RS17665 and BWI76_RS17670 are separated by 18 nucleotides BWI76_RS17655: BWI76_RS17655 - MFS transporter, at 3,667,503 to 3,668,642 _RS17655 BWI76_RS17660: BWI76_RS17660 - AraC/XylS familytranscription regulator, at 3,668,737 to 3,669,504 _RS17660 BWI76_RS17665: BWI76_RS17665 - proteasome-type protease, at 3,669,489 to 3,670,241 _RS17665 BWI76_RS17670: BWI76_RS17670 - transglutaminase, at 3,670,260 to 3,671,075 _RS17670 Position (kb) 3668 3669 3670Strain fitness (log2 ratio) -1 0 1at 3668.127 kb on - strand, within BWI76_RS17655at 3668.136 kb on + strand, within BWI76_RS17655at 3668.221 kb on + strand, within BWI76_RS17655at 3668.281 kb on - strand, within BWI76_RS17655at 3668.469 kb on + strand, within BWI76_RS17655at 3668.671 kb on + strandat 3668.946 kb on - strandat 3669.018 kb on + strand, within BWI76_RS17660at 3669.057 kb on - strand, within BWI76_RS17660at 3669.751 kb on + strand, within BWI76_RS17665at 3669.899 kb on - strand, within BWI76_RS17665at 3670.295 kb on + strandat 3670.295 kb on + strandat 3670.366 kb on - strand, within BWI76_RS17670

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB30 MOI 1
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3,668,127 - BWI76_RS17655 0.55 +0.3
3,668,136 + BWI76_RS17655 0.56 -0.8
3,668,221 + BWI76_RS17655 0.63 -0.2
3,668,281 - BWI76_RS17655 0.68 -1.4
3,668,469 + BWI76_RS17655 0.85 -1.5
3,668,671 + -0.8
3,668,946 - -0.1
3,669,018 + BWI76_RS17660 0.37 -0.8
3,669,057 - BWI76_RS17660 0.42 -1.4
3,669,751 + BWI76_RS17665 0.35 -0.5
3,669,899 - BWI76_RS17665 0.54 +0.1
3,670,295 + +0.6
3,670,295 + -0.5
3,670,366 - BWI76_RS17670 0.13 +0.1

Or see this region's nucleotide sequence