Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16220

Experiment: KLEB30 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16210 and BWI76_RS16215 overlap by 4 nucleotidesBWI76_RS16215 and BWI76_RS16220 overlap by 23 nucleotidesBWI76_RS16220 and BWI76_RS16225 overlap by 1 nucleotides BWI76_RS16210: BWI76_RS16210 - hypothetical protein, at 3,364,159 to 3,364,341 _RS16210 BWI76_RS16215: BWI76_RS16215 - hypothetical protein, at 3,364,338 to 3,365,288 _RS16215 BWI76_RS16220: BWI76_RS16220 - hypothetical protein, at 3,365,266 to 3,365,468 _RS16220 BWI76_RS16225: BWI76_RS16225 - arginine:ornithine antiporter, at 3,365,468 to 3,366,850 _RS16225 Position (kb) 3365 3366Strain fitness (log2 ratio) -1 0 1 2 3at 3364.318 kb on - strand, within BWI76_RS16210at 3364.356 kb on + strandat 3364.364 kb on - strandat 3364.458 kb on + strand, within BWI76_RS16215at 3364.581 kb on - strand, within BWI76_RS16215at 3364.813 kb on + strand, within BWI76_RS16215at 3364.835 kb on + strand, within BWI76_RS16215at 3365.240 kb on + strandat 3365.251 kb on - strandat 3365.402 kb on - strand, within BWI76_RS16220at 3365.522 kb on - strandat 3365.686 kb on - strandat 3365.958 kb on - strand, within BWI76_RS16225at 3366.062 kb on - strand, within BWI76_RS16225at 3366.087 kb on - strand, within BWI76_RS16225at 3366.160 kb on - strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB30 MOI 1
remove
3,364,318 - BWI76_RS16210 0.87 +3.0
3,364,356 + +2.3
3,364,364 - -0.0
3,364,458 + BWI76_RS16215 0.13 +1.6
3,364,581 - BWI76_RS16215 0.26 +0.8
3,364,813 + BWI76_RS16215 0.50 +0.7
3,364,835 + BWI76_RS16215 0.52 +1.4
3,365,240 + +1.0
3,365,251 - +2.3
3,365,402 - BWI76_RS16220 0.67 -1.1
3,365,522 - +1.6
3,365,686 - +3.6
3,365,958 - BWI76_RS16225 0.35 +0.2
3,366,062 - BWI76_RS16225 0.43 -0.4
3,366,087 - BWI76_RS16225 0.45 +0.4
3,366,160 - BWI76_RS16225 0.50 +0.6
3,366,356 + BWI76_RS16225 0.64 +0.1
3,366,356 + BWI76_RS16225 0.64 -0.3

Or see this region's nucleotide sequence