Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13015

Experiment: KLEB30 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13010 and BWI76_RS13015 are separated by 415 nucleotidesBWI76_RS13015 and BWI76_RS13020 are separated by 96 nucleotides BWI76_RS13010: BWI76_RS13010 - LysR family transcriptional regulator, at 2,714,488 to 2,715,408 _RS13010 BWI76_RS13015: BWI76_RS13015 - LysR family transcriptional regulator, at 2,715,824 to 2,716,735 _RS13015 BWI76_RS13020: BWI76_RS13020 - NmrA family protein, at 2,716,832 to 2,717,821 _RS13020 Position (kb) 2715 2716 2717Strain fitness (log2 ratio) -1 0 1 2 3at 2714.843 kb on - strand, within BWI76_RS13010at 2715.004 kb on + strand, within BWI76_RS13010at 2715.092 kb on - strand, within BWI76_RS13010at 2715.184 kb on + strand, within BWI76_RS13010at 2715.237 kb on - strand, within BWI76_RS13010at 2715.401 kb on + strandat 2715.759 kb on - strandat 2715.800 kb on - strandat 2715.900 kb on + strandat 2715.905 kb on + strandat 2715.908 kb on - strandat 2715.910 kb on + strandat 2715.918 kb on - strand, within BWI76_RS13015at 2715.974 kb on - strand, within BWI76_RS13015at 2715.979 kb on - strand, within BWI76_RS13015at 2716.020 kb on - strand, within BWI76_RS13015at 2716.046 kb on - strand, within BWI76_RS13015at 2716.054 kb on + strand, within BWI76_RS13015at 2716.238 kb on - strand, within BWI76_RS13015at 2716.688 kb on - strandat 2716.728 kb on - strandat 2717.120 kb on + strand, within BWI76_RS13020at 2717.144 kb on - strand, within BWI76_RS13020at 2717.359 kb on + strand, within BWI76_RS13020at 2717.457 kb on - strand, within BWI76_RS13020at 2717.654 kb on + strand, within BWI76_RS13020

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB30 MOI 1
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2,714,843 - BWI76_RS13010 0.39 -0.2
2,715,004 + BWI76_RS13010 0.56 +0.8
2,715,092 - BWI76_RS13010 0.66 -0.8
2,715,184 + BWI76_RS13010 0.76 -0.5
2,715,237 - BWI76_RS13010 0.81 +0.3
2,715,401 + +0.5
2,715,759 - +0.9
2,715,800 - -0.7
2,715,900 + -0.1
2,715,905 + +2.8
2,715,908 - +0.1
2,715,910 + +0.5
2,715,918 - BWI76_RS13015 0.10 +0.2
2,715,974 - BWI76_RS13015 0.16 -0.8
2,715,979 - BWI76_RS13015 0.17 +1.5
2,716,020 - BWI76_RS13015 0.21 +1.5
2,716,046 - BWI76_RS13015 0.24 +0.4
2,716,054 + BWI76_RS13015 0.25 +0.2
2,716,238 - BWI76_RS13015 0.45 +0.5
2,716,688 - +0.2
2,716,728 - +0.9
2,717,120 + BWI76_RS13020 0.29 -1.2
2,717,144 - BWI76_RS13020 0.32 +3.1
2,717,359 + BWI76_RS13020 0.53 -1.1
2,717,457 - BWI76_RS13020 0.63 -1.6
2,717,654 + BWI76_RS13020 0.83 -0.5

Or see this region's nucleotide sequence