Experiment: KLEB30 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02435 and BWI76_RS02440 are separated by 140 nucleotides BWI76_RS02440 and BWI76_RS02445 are separated by 10 nucleotides BWI76_RS02445 and BWI76_RS02450 are separated by 10 nucleotides BWI76_RS02450 and BWI76_RS02455 overlap by 8 nucleotides
BWI76_RS02435: BWI76_RS02435 - outer membrane lipoprotein Blc, at 499,493 to 500,023
_RS02435
BWI76_RS02440: BWI76_RS02440 - fumarate reductase subunit D, at 500,164 to 500,523
_RS02440
BWI76_RS02445: BWI76_RS02445 - fumarate reductase subunit C, at 500,534 to 500,929
_RS02445
BWI76_RS02450: BWI76_RS02450 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 500,940 to 501,674
_RS02450
BWI76_RS02455: BWI76_RS02455 - fumarate reductase flavoprotein subunit, at 501,667 to 503,457
_RS02455
Position (kb) 500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 499.606 kb on + strand, within BWI76_RS02435 at 499.614 kb on - strand, within BWI76_RS02435 at 499.828 kb on + strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.934 kb on - strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 500.052 kb on + strand at 500.299 kb on - strand, within BWI76_RS02440 at 500.304 kb on + strand, within BWI76_RS02440 at 500.463 kb on - strand, within BWI76_RS02440 at 500.543 kb on - strand at 500.543 kb on - strand at 500.586 kb on + strand, within BWI76_RS02445 at 500.762 kb on + strand, within BWI76_RS02445 at 500.848 kb on + strand, within BWI76_RS02445 at 500.850 kb on + strand, within BWI76_RS02445 at 500.911 kb on - strand at 500.948 kb on + strand at 500.956 kb on - strand at 500.994 kb on - strand at 501.287 kb on + strand, within BWI76_RS02450 at 501.420 kb on - strand, within BWI76_RS02450 at 501.475 kb on - strand, within BWI76_RS02450 at 501.505 kb on + strand, within BWI76_RS02450 at 501.552 kb on - strand, within BWI76_RS02450 at 501.601 kb on + strand at 501.601 kb on + strand at 501.688 kb on + strand at 501.874 kb on - strand, within BWI76_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB30 MOI 1 remove 499,606 + BWI76_RS02435 0.21 +0.1 499,614 - BWI76_RS02435 0.23 -0.5 499,828 + BWI76_RS02435 0.63 +1.0 499,836 - BWI76_RS02435 0.65 -3.0 499,836 - BWI76_RS02435 0.65 +0.3 499,836 - BWI76_RS02435 0.65 -0.0 499,934 - BWI76_RS02435 0.83 -0.5 499,960 + BWI76_RS02435 0.88 -0.1 499,960 + BWI76_RS02435 0.88 +2.2 499,960 + BWI76_RS02435 0.88 -0.2 500,052 + -2.2 500,299 - BWI76_RS02440 0.38 -1.0 500,304 + BWI76_RS02440 0.39 -0.9 500,463 - BWI76_RS02440 0.83 -0.3 500,543 - -1.6 500,543 - -0.1 500,586 + BWI76_RS02445 0.13 -1.9 500,762 + BWI76_RS02445 0.58 -1.2 500,848 + BWI76_RS02445 0.79 -1.0 500,850 + BWI76_RS02445 0.80 -0.6 500,911 - -1.5 500,948 + -0.2 500,956 - -0.0 500,994 - -0.2 501,287 + BWI76_RS02450 0.47 -1.0 501,420 - BWI76_RS02450 0.65 +0.0 501,475 - BWI76_RS02450 0.73 +0.0 501,505 + BWI76_RS02450 0.77 +1.7 501,552 - BWI76_RS02450 0.83 +0.6 501,601 + -1.1 501,601 + -0.1 501,688 + -0.6 501,874 - BWI76_RS02455 0.12 -0.0
Or see this region's nucleotide sequence