Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34240

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34230 and BPHYT_RS34235 are separated by 66 nucleotidesBPHYT_RS34235 and BPHYT_RS34240 are separated by 25 nucleotidesBPHYT_RS34240 and BPHYT_RS34245 overlap by 11 nucleotides BPHYT_RS34230: BPHYT_RS34230 - L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data), at 3,281,552 to 3,282,847 _RS34230 BPHYT_RS34235: BPHYT_RS34235 - putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data), at 3,282,914 to 3,283,246 _RS34235 BPHYT_RS34240: BPHYT_RS34240 - ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data), at 3,283,272 to 3,284,327 _RS34240 BPHYT_RS34245: BPHYT_RS34245 - ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data), at 3,284,317 to 3,285,849 _RS34245 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -1 0 1 2at 3282.525 kb on + strand, within BPHYT_RS34230at 3282.526 kb on - strand, within BPHYT_RS34230at 3282.526 kb on - strand, within BPHYT_RS34230at 3282.759 kb on + strandat 3282.810 kb on + strandat 3282.986 kb on - strand, within BPHYT_RS34235at 3283.232 kb on + strandat 3283.531 kb on + strand, within BPHYT_RS34240at 3283.531 kb on + strandat 3283.655 kb on - strand, within BPHYT_RS34240at 3284.178 kb on + strand, within BPHYT_RS34240at 3284.318 kb on + strandat 3284.318 kb on + strandat 3284.318 kb on + strandat 3284.319 kb on - strandat 3284.934 kb on + strand, within BPHYT_RS34245

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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3,282,525 + BPHYT_RS34230 0.75 -0.0
3,282,526 - BPHYT_RS34230 0.75 -0.3
3,282,526 - BPHYT_RS34230 0.75 +0.7
3,282,759 + -0.5
3,282,810 + +1.8
3,282,986 - BPHYT_RS34235 0.22 -0.0
3,283,232 + +0.3
3,283,531 + BPHYT_RS34240 0.25 -0.3
3,283,531 + -1.2
3,283,655 - BPHYT_RS34240 0.36 +1.1
3,284,178 + BPHYT_RS34240 0.86 -0.0
3,284,318 + -0.2
3,284,318 + -0.6
3,284,318 + +0.5
3,284,319 - +0.8
3,284,934 + BPHYT_RS34245 0.40 -0.5

Or see this region's nucleotide sequence