Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34230 and BPHYT_RS34235 are separated by 66 nucleotides BPHYT_RS34235 and BPHYT_RS34240 are separated by 25 nucleotides BPHYT_RS34240 and BPHYT_RS34245 overlap by 11 nucleotides
BPHYT_RS34230: BPHYT_RS34230 - L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) , at 3,281,552 to 3,282,847
_RS34230
BPHYT_RS34235: BPHYT_RS34235 - putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) , at 3,282,914 to 3,283,246
_RS34235
BPHYT_RS34240: BPHYT_RS34240 - ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) , at 3,283,272 to 3,284,327
_RS34240
BPHYT_RS34245: BPHYT_RS34245 - ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) , at 3,284,317 to 3,285,849
_RS34245
Position (kb)
3283
3284
3285 Strain fitness (log2 ratio)
-1
0
1
2 at 3282.525 kb on + strand, within BPHYT_RS34230 at 3282.526 kb on - strand, within BPHYT_RS34230 at 3282.526 kb on - strand, within BPHYT_RS34230 at 3282.759 kb on + strand at 3282.810 kb on + strand at 3282.986 kb on - strand, within BPHYT_RS34235 at 3283.232 kb on + strand at 3283.531 kb on + strand, within BPHYT_RS34240 at 3283.531 kb on + strand at 3283.655 kb on - strand, within BPHYT_RS34240 at 3284.178 kb on + strand, within BPHYT_RS34240 at 3284.318 kb on + strand at 3284.318 kb on + strand at 3284.318 kb on + strand at 3284.319 kb on - strand at 3284.934 kb on + strand, within BPHYT_RS34245
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 3,282,525 + BPHYT_RS34230 0.75 -0.0 3,282,526 - BPHYT_RS34230 0.75 -0.3 3,282,526 - BPHYT_RS34230 0.75 +0.7 3,282,759 + -0.5 3,282,810 + +1.8 3,282,986 - BPHYT_RS34235 0.22 -0.0 3,283,232 + +0.3 3,283,531 + BPHYT_RS34240 0.25 -0.3 3,283,531 + -1.2 3,283,655 - BPHYT_RS34240 0.36 +1.1 3,284,178 + BPHYT_RS34240 0.86 -0.0 3,284,318 + -0.2 3,284,318 + -0.6 3,284,318 + +0.5 3,284,319 - +0.8 3,284,934 + BPHYT_RS34245 0.40 -0.5
Or see this region's nucleotide sequence