Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28375

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28370 and BPHYT_RS28375 are separated by 506 nucleotidesBPHYT_RS28375 and BPHYT_RS28380 are separated by 49 nucleotides BPHYT_RS28370: BPHYT_RS28370 - peroxidase, at 1,916,022 to 1,916,885 _RS28370 BPHYT_RS28375: BPHYT_RS28375 - hypothetical protein, at 1,917,392 to 1,917,952 _RS28375 BPHYT_RS28380: BPHYT_RS28380 - lon protease, at 1,918,002 to 1,920,416 _RS28380 Position (kb) 1917 1918Strain fitness (log2 ratio) -2 -1 0 1at 1917.252 kb on - strandat 1917.783 kb on + strand, within BPHYT_RS28375at 1918.584 kb on - strand, within BPHYT_RS28380

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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1,917,252 - +0.3
1,917,783 + BPHYT_RS28375 0.70 -0.4
1,918,584 - BPHYT_RS28380 0.24 -1.8

Or see this region's nucleotide sequence