Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28355 and BPHYT_RS28360 are separated by 111 nucleotides BPHYT_RS28360 and BPHYT_RS28365 are separated by 15 nucleotides BPHYT_RS28365 and BPHYT_RS28370 are separated by 32 nucleotides BPHYT_RS28370 and BPHYT_RS28375 are separated by 506 nucleotides
BPHYT_RS28355: BPHYT_RS28355 - LysR family transcriptional regulator, at 1,914,232 to 1,915,134
_RS28355
BPHYT_RS28360: BPHYT_RS28360 - carboxymuconolactone decarboxylase, at 1,915,246 to 1,915,569
_RS28360
BPHYT_RS28365: BPHYT_RS28365 - Germin subfamily 1 member 15, at 1,915,585 to 1,915,989
_RS28365
BPHYT_RS28370: BPHYT_RS28370 - peroxidase, at 1,916,022 to 1,916,885
_RS28370
BPHYT_RS28375: BPHYT_RS28375 - hypothetical protein, at 1,917,392 to 1,917,952
_RS28375
Position (kb) 1916
1917 Strain fitness (log2 ratio) -1
0
1 at 1915.052 kb on - strand at 1915.072 kb on - strand at 1915.136 kb on + strand at 1915.241 kb on - strand at 1915.243 kb on + strand at 1915.501 kb on + strand, within BPHYT_RS28360 at 1915.502 kb on - strand, within BPHYT_RS28360 at 1915.860 kb on + strand, within BPHYT_RS28365 at 1915.969 kb on + strand at 1915.970 kb on - strand at 1916.191 kb on + strand, within BPHYT_RS28370 at 1917.252 kb on - strand at 1917.783 kb on + strand, within BPHYT_RS28375
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 1,915,052 - -0.4 1,915,072 - +0.7 1,915,136 + -1.0 1,915,241 - -0.1 1,915,243 + +0.1 1,915,501 + BPHYT_RS28360 0.79 -0.1 1,915,502 - BPHYT_RS28360 0.79 -1.1 1,915,860 + BPHYT_RS28365 0.68 -0.7 1,915,969 + -0.5 1,915,970 - +0.1 1,916,191 + BPHYT_RS28370 0.20 +1.0 1,917,252 - +0.3 1,917,783 + BPHYT_RS28375 0.70 -0.4
Or see this region's nucleotide sequence