Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24650 and BPHYT_RS24655 are separated by 67 nucleotides BPHYT_RS24655 and BPHYT_RS24660 are separated by 55 nucleotides BPHYT_RS24660 and BPHYT_RS24665 are separated by 35 nucleotides BPHYT_RS24665 and BPHYT_RS24670 overlap by 4 nucleotides
BPHYT_RS24650: BPHYT_RS24650 - polar amino acid ABC transporter permease, at 1,100,688 to 1,101,434
_RS24650
BPHYT_RS24655: BPHYT_RS24655 - amino acid ABC transporter substrate-binding protein, at 1,101,502 to 1,102,326
_RS24655
BPHYT_RS24660: BPHYT_RS24660 - ABC transporter ATP-binding protein, at 1,102,382 to 1,103,455
_RS24660
BPHYT_RS24665: BPHYT_RS24665 - ABC transporter permease, at 1,103,491 to 1,104,378
_RS24665
BPHYT_RS24670: BPHYT_RS24670 - ABC transporter permease, at 1,104,375 to 1,105,334
_RS24670
Position (kb) 1102
1103
1104 Strain fitness (log2 ratio) -1
0
1
2 at 1101.427 kb on + strand at 1101.427 kb on + strand at 1101.428 kb on - strand at 1101.428 kb on - strand at 1101.428 kb on - strand at 1101.497 kb on + strand at 1101.772 kb on - strand, within BPHYT_RS24655 at 1102.376 kb on + strand at 1102.377 kb on - strand at 1102.791 kb on + strand, within BPHYT_RS24660 at 1102.791 kb on + strand, within BPHYT_RS24660 at 1102.791 kb on + strand, within BPHYT_RS24660 at 1102.792 kb on - strand, within BPHYT_RS24660 at 1102.792 kb on - strand, within BPHYT_RS24660 at 1103.444 kb on + strand at 1104.024 kb on - strand, within BPHYT_RS24665
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 1,101,427 + -0.0 1,101,427 + +0.1 1,101,428 - -1.1 1,101,428 - -1.5 1,101,428 - -0.7 1,101,497 + -0.4 1,101,772 - BPHYT_RS24655 0.33 -0.5 1,102,376 + -0.5 1,102,377 - -0.2 1,102,791 + BPHYT_RS24660 0.38 +0.6 1,102,791 + BPHYT_RS24660 0.38 +0.8 1,102,791 + BPHYT_RS24660 0.38 +0.4 1,102,792 - BPHYT_RS24660 0.38 +1.8 1,102,792 - BPHYT_RS24660 0.38 +0.0 1,103,444 + +0.6 1,104,024 - BPHYT_RS24665 0.60 -0.2
Or see this region's nucleotide sequence