Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01755 and BPHYT_RS01760 are separated by 129 nucleotides BPHYT_RS01760 and BPHYT_RS01765 are separated by 22 nucleotides BPHYT_RS01765 and BPHYT_RS01770 are separated by 10 nucleotides BPHYT_RS01770 and BPHYT_RS01775 are separated by 378 nucleotides
BPHYT_RS01755: BPHYT_RS01755 - ATPase, at 399,343 to 400,230
_RS01755
BPHYT_RS01760: BPHYT_RS01760 - carbon-monoxide dehydrogenase, at 400,360 to 401,157
_RS01760
BPHYT_RS01765: BPHYT_RS01765 - carbon-monoxide dehydrogenase, at 401,180 to 403,561
_RS01765
BPHYT_RS01770: BPHYT_RS01770 - carbon monoxide dehydrogenase, at 403,572 to 404,090
_RS01770
BPHYT_RS01775: BPHYT_RS01775 - hypothetical protein, at 404,469 to 404,813
_RS01775
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -1
0
1
2 at 400.418 kb on + strand at 400.710 kb on - strand, within BPHYT_RS01760 at 400.710 kb on - strand, within BPHYT_RS01760 at 400.710 kb on - strand, within BPHYT_RS01760 at 400.866 kb on + strand, within BPHYT_RS01760 at 401.141 kb on + strand at 401.153 kb on + strand at 401.153 kb on + strand at 401.154 kb on - strand at 401.154 kb on - strand at 401.154 kb on - strand at 401.430 kb on + strand, within BPHYT_RS01765 at 401.466 kb on + strand, within BPHYT_RS01765 at 401.467 kb on - strand, within BPHYT_RS01765 at 401.646 kb on + strand, within BPHYT_RS01765 at 401.646 kb on + strand, within BPHYT_RS01765 at 401.647 kb on - strand, within BPHYT_RS01765 at 401.647 kb on - strand, within BPHYT_RS01765 at 401.668 kb on - strand, within BPHYT_RS01765 at 401.713 kb on - strand, within BPHYT_RS01765 at 401.727 kb on + strand, within BPHYT_RS01765 at 401.727 kb on + strand, within BPHYT_RS01765 at 402.137 kb on + strand, within BPHYT_RS01765 at 402.140 kb on - strand, within BPHYT_RS01765 at 402.171 kb on + strand, within BPHYT_RS01765 at 402.171 kb on + strand, within BPHYT_RS01765 at 402.181 kb on - strand, within BPHYT_RS01765 at 402.298 kb on - strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.415 kb on - strand, within BPHYT_RS01765 at 402.415 kb on - strand, within BPHYT_RS01765 at 402.493 kb on - strand, within BPHYT_RS01765 at 402.534 kb on + strand, within BPHYT_RS01765 at 402.573 kb on + strand, within BPHYT_RS01765 at 402.574 kb on - strand, within BPHYT_RS01765 at 402.894 kb on + strand, within BPHYT_RS01765 at 402.895 kb on - strand, within BPHYT_RS01765 at 402.903 kb on + strand, within BPHYT_RS01765 at 402.903 kb on + strand, within BPHYT_RS01765 at 402.904 kb on - strand, within BPHYT_RS01765 at 402.924 kb on + strand, within BPHYT_RS01765 at 403.057 kb on - strand, within BPHYT_RS01765 at 403.146 kb on + strand, within BPHYT_RS01765 at 403.365 kb on - strand at 403.479 kb on + strand at 403.506 kb on + strand at 403.507 kb on - strand at 403.516 kb on + strand at 403.516 kb on + strand at 403.516 kb on + strand at 403.517 kb on - strand at 404.202 kb on - strand at 404.226 kb on + strand at 404.305 kb on - strand at 404.307 kb on + strand at 404.307 kb on + strand at 404.308 kb on - strand at 404.335 kb on - strand at 404.406 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.426 kb on - strand at 404.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 400,418 + +0.2 400,710 - BPHYT_RS01760 0.44 +0.1 400,710 - BPHYT_RS01760 0.44 +0.1 400,710 - BPHYT_RS01760 0.44 -0.6 400,866 + BPHYT_RS01760 0.63 +0.0 401,141 + +0.9 401,153 + -0.6 401,153 + +0.2 401,154 - -1.4 401,154 - -0.7 401,154 - -0.3 401,430 + BPHYT_RS01765 0.10 +0.8 401,466 + BPHYT_RS01765 0.12 -0.3 401,467 - BPHYT_RS01765 0.12 -0.4 401,646 + BPHYT_RS01765 0.20 +0.6 401,646 + BPHYT_RS01765 0.20 -0.8 401,647 - BPHYT_RS01765 0.20 -0.8 401,647 - BPHYT_RS01765 0.20 -0.0 401,668 - BPHYT_RS01765 0.20 -0.2 401,713 - BPHYT_RS01765 0.22 -0.4 401,727 + BPHYT_RS01765 0.23 -0.9 401,727 + BPHYT_RS01765 0.23 -0.6 402,137 + BPHYT_RS01765 0.40 -0.3 402,140 - BPHYT_RS01765 0.40 +0.7 402,171 + BPHYT_RS01765 0.42 -0.1 402,171 + BPHYT_RS01765 0.42 +0.1 402,181 - BPHYT_RS01765 0.42 +0.8 402,298 - BPHYT_RS01765 0.47 +0.2 402,414 + BPHYT_RS01765 0.52 +0.1 402,414 + BPHYT_RS01765 0.52 +0.6 402,414 + BPHYT_RS01765 0.52 -0.5 402,414 + BPHYT_RS01765 0.52 +0.2 402,414 + BPHYT_RS01765 0.52 -0.6 402,414 + BPHYT_RS01765 0.52 -0.9 402,415 - BPHYT_RS01765 0.52 +1.2 402,415 - BPHYT_RS01765 0.52 -0.5 402,493 - BPHYT_RS01765 0.55 -0.4 402,534 + BPHYT_RS01765 0.57 +1.6 402,573 + BPHYT_RS01765 0.58 +0.1 402,574 - BPHYT_RS01765 0.59 +1.2 402,894 + BPHYT_RS01765 0.72 -0.5 402,895 - BPHYT_RS01765 0.72 -0.0 402,903 + BPHYT_RS01765 0.72 +0.4 402,903 + BPHYT_RS01765 0.72 +0.3 402,904 - BPHYT_RS01765 0.72 -0.7 402,924 + BPHYT_RS01765 0.73 -0.1 403,057 - BPHYT_RS01765 0.79 +0.4 403,146 + BPHYT_RS01765 0.83 -1.0 403,365 - +0.4 403,479 + +0.8 403,506 + -0.3 403,507 - -0.9 403,516 + -0.9 403,516 + -0.1 403,516 + +0.1 403,517 - +2.4 404,202 - +0.1 404,226 + +0.2 404,305 - -0.1 404,307 + -0.5 404,307 + -0.2 404,308 - +0.2 404,335 - +0.4 404,406 + -0.2 404,425 + -0.2 404,425 + -0.6 404,425 + -0.4 404,425 + -0.6 404,426 - -0.3 404,470 + +0.1
Or see this region's nucleotide sequence