Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36405 and BPHYT_RS36410 overlap by 1 nucleotides BPHYT_RS36410 and BPHYT_RS36415 overlap by 11 nucleotides BPHYT_RS36415 and BPHYT_RS36420 are separated by 514 nucleotides
BPHYT_RS36405: BPHYT_RS36405 - hypothetical protein, at 93,194 to 94,993
_RS36405
BPHYT_RS36410: BPHYT_RS36410 - integrase family protein, at 94,993 to 96,930
_RS36410
BPHYT_RS36415: BPHYT_RS36415 - hypothetical protein, at 96,920 to 97,381
_RS36415
BPHYT_RS36420: BPHYT_RS36420 - hypothetical protein, at 97,896 to 98,369
_RS36420
Position (kb) 94
95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.063 kb on - strand, within BPHYT_RS36405 at 94.224 kb on + strand, within BPHYT_RS36405 at 94.271 kb on + strand, within BPHYT_RS36405 at 94.271 kb on + strand, within BPHYT_RS36405 at 94.297 kb on - strand, within BPHYT_RS36405 at 94.435 kb on + strand, within BPHYT_RS36405 at 94.436 kb on - strand, within BPHYT_RS36405 at 94.481 kb on + strand, within BPHYT_RS36405 at 94.992 kb on - strand at 95.092 kb on - strand at 95.124 kb on - strand at 95.400 kb on - strand, within BPHYT_RS36410 at 95.436 kb on + strand, within BPHYT_RS36410 at 95.437 kb on - strand, within BPHYT_RS36410 at 95.437 kb on - strand, within BPHYT_RS36410 at 95.678 kb on - strand, within BPHYT_RS36410 at 95.747 kb on + strand, within BPHYT_RS36410 at 95.748 kb on - strand, within BPHYT_RS36410 at 95.828 kb on + strand, within BPHYT_RS36410 at 95.832 kb on + strand, within BPHYT_RS36410 at 95.832 kb on + strand, within BPHYT_RS36410 at 96.143 kb on - strand, within BPHYT_RS36410 at 96.611 kb on - strand at 96.655 kb on + strand, within BPHYT_RS36410 at 96.963 kb on - strand at 97.108 kb on - strand, within BPHYT_RS36415 at 97.153 kb on - strand, within BPHYT_RS36415 at 97.450 kb on - strand at 97.492 kb on - strand at 97.492 kb on - strand at 97.573 kb on - strand at 97.614 kb on + strand at 97.615 kb on - strand at 97.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 94,063 - BPHYT_RS36405 0.48 -0.1 94,224 + BPHYT_RS36405 0.57 -0.2 94,271 + BPHYT_RS36405 0.60 +0.4 94,271 + BPHYT_RS36405 0.60 +0.8 94,297 - BPHYT_RS36405 0.61 +0.6 94,435 + BPHYT_RS36405 0.69 -0.0 94,436 - BPHYT_RS36405 0.69 +2.0 94,481 + BPHYT_RS36405 0.71 -0.6 94,992 - +0.7 95,092 - +0.5 95,124 - +0.4 95,400 - BPHYT_RS36410 0.21 -0.1 95,436 + BPHYT_RS36410 0.23 +0.4 95,437 - BPHYT_RS36410 0.23 -1.1 95,437 - BPHYT_RS36410 0.23 +0.4 95,678 - BPHYT_RS36410 0.35 +0.7 95,747 + BPHYT_RS36410 0.39 -0.1 95,748 - BPHYT_RS36410 0.39 +0.3 95,828 + BPHYT_RS36410 0.43 -1.1 95,832 + BPHYT_RS36410 0.43 -0.6 95,832 + BPHYT_RS36410 0.43 +1.0 96,143 - BPHYT_RS36410 0.59 +0.6 96,611 - +0.6 96,655 + BPHYT_RS36410 0.86 -1.6 96,963 - +1.0 97,108 - BPHYT_RS36415 0.41 +0.6 97,153 - BPHYT_RS36415 0.50 -0.8 97,450 - -2.3 97,492 - -0.4 97,492 - +0.6 97,573 - -0.4 97,614 + -1.0 97,615 - +0.3 97,671 - +0.9
Or see this region's nucleotide sequence