Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31650

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31645 and BPHYT_RS31650 overlap by 1 nucleotidesBPHYT_RS31650 and BPHYT_RS31655 are separated by 22 nucleotides BPHYT_RS31645: BPHYT_RS31645 - FAD-binding protein, at 2,654,131 to 2,655,630 _RS31645 BPHYT_RS31650: BPHYT_RS31650 - FAD-binding protein, at 2,655,630 to 2,656,697 _RS31650 BPHYT_RS31655: BPHYT_RS31655 - glycolate oxidase, at 2,656,720 to 2,657,949 _RS31655 Position (kb) 2655 2656 2657Strain fitness (log2 ratio) -2 -1 0 1at 2655.184 kb on + strand, within BPHYT_RS31645at 2655.184 kb on + strand, within BPHYT_RS31645at 2655.805 kb on - strand, within BPHYT_RS31650at 2656.832 kb on - strandat 2656.832 kb on - strandat 2656.876 kb on + strand, within BPHYT_RS31655at 2656.990 kb on + strand, within BPHYT_RS31655at 2657.118 kb on + strand, within BPHYT_RS31655at 2657.118 kb on + strand, within BPHYT_RS31655at 2657.118 kb on + strand, within BPHYT_RS31655at 2657.119 kb on - strand, within BPHYT_RS31655at 2657.454 kb on - strand, within BPHYT_RS31655at 2657.454 kb on - strand, within BPHYT_RS31655at 2657.491 kb on + strand, within BPHYT_RS31655at 2657.573 kb on + strand, within BPHYT_RS31655at 2657.581 kb on - strand, within BPHYT_RS31655

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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2,655,184 + BPHYT_RS31645 0.70 -2.2
2,655,184 + BPHYT_RS31645 0.70 +0.6
2,655,805 - BPHYT_RS31650 0.16 +0.9
2,656,832 - +0.2
2,656,832 - +0.4
2,656,876 + BPHYT_RS31655 0.13 +0.3
2,656,990 + BPHYT_RS31655 0.22 -0.7
2,657,118 + BPHYT_RS31655 0.32 -0.1
2,657,118 + BPHYT_RS31655 0.32 +0.2
2,657,118 + BPHYT_RS31655 0.32 -0.4
2,657,119 - BPHYT_RS31655 0.32 +0.5
2,657,454 - BPHYT_RS31655 0.60 +0.7
2,657,454 - BPHYT_RS31655 0.60 -1.8
2,657,491 + BPHYT_RS31655 0.63 -0.3
2,657,573 + BPHYT_RS31655 0.69 -0.4
2,657,581 - BPHYT_RS31655 0.70 +0.4

Or see this region's nucleotide sequence