Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31370

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31365 and BPHYT_RS31370 are separated by 269 nucleotidesBPHYT_RS31370 and BPHYT_RS31375 are separated by 596 nucleotides BPHYT_RS31365: BPHYT_RS31365 - hypothetical protein, at 2,591,942 to 2,592,703 _RS31365 BPHYT_RS31370: BPHYT_RS31370 - hypothetical protein, at 2,592,973 to 2,593,179 _RS31370 BPHYT_RS31375: BPHYT_RS31375 - AraC family transcriptional regulator, at 2,593,776 to 2,594,693 _RS31375 Position (kb) 2592 2593 2594Strain fitness (log2 ratio) -1 0 1at 2591.980 kb on + strandat 2591.981 kb on - strandat 2593.876 kb on + strand, within BPHYT_RS31375at 2593.923 kb on + strand, within BPHYT_RS31375

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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2,591,980 + -0.6
2,591,981 - -0.9
2,593,876 + BPHYT_RS31375 0.11 +0.3
2,593,923 + BPHYT_RS31375 0.16 +0.1

Or see this region's nucleotide sequence