Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31355

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31350 and BPHYT_RS31355 are separated by 286 nucleotidesBPHYT_RS31355 and BPHYT_RS31360 are separated by 54 nucleotides BPHYT_RS31350: BPHYT_RS31350 - LysR family transcriptional regulator, at 2,588,278 to 2,589,192 _RS31350 BPHYT_RS31355: BPHYT_RS31355 - hypothetical protein, at 2,589,479 to 2,589,787 _RS31355 BPHYT_RS31360: BPHYT_RS31360 - ATP-dependent DNA helicase RecQ, at 2,589,842 to 2,591,608 _RS31360 Position (kb) 2589 2590Strain fitness (log2 ratio) -1 0 1at 2588.874 kb on - strand, within BPHYT_RS31350at 2589.368 kb on - strandat 2590.147 kb on - strand, within BPHYT_RS31360at 2590.612 kb on - strand, within BPHYT_RS31360at 2590.777 kb on - strand, within BPHYT_RS31360

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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2,588,874 - BPHYT_RS31350 0.65 +0.5
2,589,368 - -0.5
2,590,147 - BPHYT_RS31360 0.17 +0.4
2,590,612 - BPHYT_RS31360 0.44 -1.5
2,590,777 - BPHYT_RS31360 0.53 -0.4

Or see this region's nucleotide sequence