Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS29090 and BPHYT_RS29095 are separated by 71 nucleotides BPHYT_RS29095 and BPHYT_RS29100 are separated by 191 nucleotides BPHYT_RS29100 and BPHYT_RS29105 are separated by 15 nucleotides
BPHYT_RS29090: BPHYT_RS29090 - oxidoreductase, at 2,080,883 to 2,081,617
_RS29090
BPHYT_RS29095: BPHYT_RS29095 - coenzyme F420-dependent NADP oxidoreductase, at 2,081,689 to 2,082,288
_RS29095
BPHYT_RS29100: BPHYT_RS29100 - ketosteroid isomerase, at 2,082,480 to 2,082,896
_RS29100
BPHYT_RS29105: BPHYT_RS29105 - class V aminotransferase, at 2,082,912 to 2,084,039
_RS29105
Position (kb) 2082
2083 Strain fitness (log2 ratio) -1
0
1 at 2081.703 kb on + strand at 2081.704 kb on - strand at 2082.096 kb on - strand, within BPHYT_RS29095 at 2082.837 kb on + strand, within BPHYT_RS29100 at 2082.913 kb on + strand at 2083.234 kb on + strand, within BPHYT_RS29105 at 2083.691 kb on - strand, within BPHYT_RS29105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 2,081,703 + +1.7 2,081,704 - -1.7 2,082,096 - BPHYT_RS29095 0.68 -0.9 2,082,837 + BPHYT_RS29100 0.86 +1.4 2,082,913 + +0.1 2,083,234 + BPHYT_RS29105 0.29 +0.6 2,083,691 - BPHYT_RS29105 0.69 -0.9
Or see this region's nucleotide sequence