Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28640 and BPHYT_RS28645 are separated by 1 nucleotides BPHYT_RS28645 and BPHYT_RS28650 overlap by 16 nucleotides BPHYT_RS28650 and BPHYT_RS28655 overlap by 8 nucleotides BPHYT_RS28655 and BPHYT_RS28660 are separated by 1 nucleotides
BPHYT_RS28640: BPHYT_RS28640 - ATPase, at 1,979,383 to 1,981,047
_RS28640
BPHYT_RS28645: BPHYT_RS28645 - serine/threonine protein kinase, at 1,981,049 to 1,982,041
_RS28645
BPHYT_RS28650: BPHYT_RS28650 - anti-sigma regulatory factor, at 1,982,026 to 1,982,436
_RS28650
BPHYT_RS28655: BPHYT_RS28655 - anti-sigma factor antagonist, at 1,982,429 to 1,982,806
_RS28655
BPHYT_RS28660: BPHYT_RS28660 - polyvinylalcohol dehydrogenase, at 1,982,808 to 1,983,674
_RS28660
Position (kb) 1982
1983 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1981.075 kb on + strand at 1981.075 kb on + strand at 1981.505 kb on - strand, within BPHYT_RS28645 at 1981.698 kb on + strand, within BPHYT_RS28645 at 1981.714 kb on + strand, within BPHYT_RS28645 at 1981.844 kb on - strand, within BPHYT_RS28645 at 1981.844 kb on - strand, within BPHYT_RS28645 at 1981.858 kb on - strand, within BPHYT_RS28645 at 1981.890 kb on + strand, within BPHYT_RS28645 at 1981.891 kb on - strand, within BPHYT_RS28645 at 1981.898 kb on + strand, within BPHYT_RS28645 at 1981.900 kb on + strand, within BPHYT_RS28645 at 1982.046 kb on + strand at 1982.338 kb on - strand, within BPHYT_RS28650 at 1982.806 kb on + strand at 1983.253 kb on + strand, within BPHYT_RS28660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,981,075 + -0.7 1,981,075 + -0.8 1,981,505 - BPHYT_RS28645 0.46 -0.4 1,981,698 + BPHYT_RS28645 0.65 -2.9 1,981,714 + BPHYT_RS28645 0.67 -0.2 1,981,844 - BPHYT_RS28645 0.80 -1.4 1,981,844 - BPHYT_RS28645 0.80 -0.1 1,981,858 - BPHYT_RS28645 0.81 -0.7 1,981,890 + BPHYT_RS28645 0.85 -1.2 1,981,891 - BPHYT_RS28645 0.85 -0.1 1,981,898 + BPHYT_RS28645 0.85 +0.9 1,981,900 + BPHYT_RS28645 0.86 -0.5 1,982,046 + +0.3 1,982,338 - BPHYT_RS28650 0.76 +0.6 1,982,806 + -0.1 1,983,253 + BPHYT_RS28660 0.51 -0.2
Or see this region's nucleotide sequence