Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27220 and BPHYT_RS27225 are separated by 83 nucleotides BPHYT_RS27225 and BPHYT_RS27230 are separated by 119 nucleotides BPHYT_RS27230 and BPHYT_RS27235 are separated by 186 nucleotides BPHYT_RS27235 and BPHYT_RS27240 are separated by 142 nucleotides
BPHYT_RS27220: BPHYT_RS27220 - galactarate dehydratase, at 1,684,059 to 1,685,585
_RS27220
BPHYT_RS27225: BPHYT_RS27225 - hypothetical protein, at 1,685,669 to 1,685,902
_RS27225
BPHYT_RS27230: BPHYT_RS27230 - hypothetical protein, at 1,686,022 to 1,686,363
_RS27230
BPHYT_RS27235: BPHYT_RS27235 - hypothetical protein, at 1,686,550 to 1,686,906
_RS27235
BPHYT_RS27240: BPHYT_RS27240 - N-ethylmaleimide reductase, at 1,687,049 to 1,688,152
_RS27240
Position (kb) 1686
1687 Strain fitness (log2 ratio) -1
0
1 at 1686.010 kb on + strand at 1686.011 kb on - strand at 1686.076 kb on + strand, within BPHYT_RS27230 at 1686.362 kb on - strand at 1687.360 kb on - strand, within BPHYT_RS27240 at 1687.360 kb on - strand, within BPHYT_RS27240
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,686,010 + -0.5 1,686,011 - -0.0 1,686,076 + BPHYT_RS27230 0.16 -1.3 1,686,362 - +0.6 1,687,360 - BPHYT_RS27240 0.28 +0.4 1,687,360 - BPHYT_RS27240 0.28 -0.4
Or see this region's nucleotide sequence