Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24175 and BPHYT_RS24180 are separated by 153 nucleotides BPHYT_RS24180 and BPHYT_RS24185 are separated by 7 nucleotides BPHYT_RS24185 and BPHYT_RS24190 are separated by 98 nucleotides
BPHYT_RS24175: BPHYT_RS24175 - C4-dicarboxylate ABC transporter, at 992,325 to 993,317
_RS24175
BPHYT_RS24180: BPHYT_RS24180 - C4-dicarboxylate ABC transporter substrate-binding protein, at 993,471 to 993,950
_RS24180
BPHYT_RS24185: BPHYT_RS24185 - C4-dicarboxylate ABC transporter permease, at 993,958 to 995,310
_RS24185
BPHYT_RS24190: BPHYT_RS24190 - porin, at 995,409 to 996,608
_RS24190
Position (kb) 993
994
995
996 Strain fitness (log2 ratio) -1
0
1
2 at 994.429 kb on + strand, within BPHYT_RS24185 at 994.429 kb on + strand, within BPHYT_RS24185 at 994.430 kb on - strand, within BPHYT_RS24185 at 994.430 kb on - strand, within BPHYT_RS24185 at 994.430 kb on - strand, within BPHYT_RS24185 at 994.970 kb on - strand, within BPHYT_RS24185 at 995.212 kb on + strand at 995.215 kb on + strand at 995.252 kb on - strand at 995.498 kb on + strand at 995.721 kb on + strand at 995.721 kb on + strand, within BPHYT_RS24190 at 995.722 kb on - strand, within BPHYT_RS24190 at 995.745 kb on + strand, within BPHYT_RS24190 at 995.745 kb on + strand, within BPHYT_RS24190 at 995.746 kb on - strand, within BPHYT_RS24190 at 995.875 kb on - strand, within BPHYT_RS24190 at 995.899 kb on - strand, within BPHYT_RS24190 at 996.004 kb on - strand, within BPHYT_RS24190 at 996.237 kb on + strand, within BPHYT_RS24190 at 996.237 kb on + strand, within BPHYT_RS24190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 994,429 + BPHYT_RS24185 0.35 +0.7 994,429 + BPHYT_RS24185 0.35 +2.0 994,430 - BPHYT_RS24185 0.35 +0.1 994,430 - BPHYT_RS24185 0.35 +1.6 994,430 - BPHYT_RS24185 0.35 -0.4 994,970 - BPHYT_RS24185 0.75 +1.6 995,212 + +0.0 995,215 + -0.4 995,252 - -1.0 995,498 + -0.0 995,721 + +0.0 995,721 + BPHYT_RS24190 0.26 +0.8 995,722 - BPHYT_RS24190 0.26 +0.3 995,745 + BPHYT_RS24190 0.28 -0.4 995,745 + BPHYT_RS24190 0.28 +0.0 995,746 - BPHYT_RS24190 0.28 -0.3 995,875 - BPHYT_RS24190 0.39 +1.5 995,899 - BPHYT_RS24190 0.41 +0.5 996,004 - BPHYT_RS24190 0.50 +0.1 996,237 + BPHYT_RS24190 0.69 +0.0 996,237 + BPHYT_RS24190 0.69 +1.0
Or see this region's nucleotide sequence