Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22620 and BPHYT_RS22625 are separated by 156 nucleotides BPHYT_RS22625 and BPHYT_RS22630 are separated by 398 nucleotides
BPHYT_RS22620: BPHYT_RS22620 - MFS transporter, at 630,539 to 632,014
_RS22620
BPHYT_RS22625: BPHYT_RS22625 - MFS transporter, at 632,171 to 633,472
_RS22625
BPHYT_RS22630: BPHYT_RS22630 - transcriptional regulator, at 633,871 to 634,611
_RS22630
Position (kb) 632
633
634 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 631.289 kb on + strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.752 kb on - strand, within BPHYT_RS22620 at 631.843 kb on - strand, within BPHYT_RS22620 at 631.925 kb on + strand at 631.926 kb on - strand at 632.026 kb on + strand at 632.027 kb on - strand at 632.027 kb on - strand at 632.241 kb on + strand at 632.241 kb on + strand at 632.242 kb on - strand at 632.242 kb on - strand at 632.317 kb on - strand, within BPHYT_RS22625 at 632.431 kb on - strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.830 kb on - strand, within BPHYT_RS22625 at 632.988 kb on + strand, within BPHYT_RS22625 at 632.989 kb on - strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.507 kb on + strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.520 kb on + strand at 633.664 kb on + strand at 633.665 kb on - strand at 633.751 kb on + strand at 633.791 kb on - strand at 633.794 kb on + strand at 633.795 kb on - strand at 633.800 kb on - strand at 633.853 kb on + strand at 633.858 kb on + strand at 633.859 kb on - strand at 633.859 kb on - strand at 633.876 kb on + strand at 633.876 kb on + strand at 633.959 kb on - strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.232 kb on - strand, within BPHYT_RS22630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 631,289 + BPHYT_RS22620 0.51 -0.1 631,290 - BPHYT_RS22620 0.51 +0.6 631,290 - BPHYT_RS22620 0.51 +3.0 631,752 - BPHYT_RS22620 0.82 +1.2 631,843 - BPHYT_RS22620 0.88 +0.2 631,925 + -1.6 631,926 - +0.0 632,026 + +1.2 632,027 - +2.0 632,027 - -1.0 632,241 + -1.0 632,241 + +0.2 632,242 - +0.0 632,242 - +1.0 632,317 - BPHYT_RS22625 0.11 -0.2 632,431 - BPHYT_RS22625 0.20 -0.7 632,481 + BPHYT_RS22625 0.24 +0.4 632,481 + BPHYT_RS22625 0.24 -0.6 632,482 - BPHYT_RS22625 0.24 +2.0 632,482 - BPHYT_RS22625 0.24 +0.3 632,482 - BPHYT_RS22625 0.24 -0.4 632,485 - BPHYT_RS22625 0.24 +0.8 632,485 - BPHYT_RS22625 0.24 +1.8 632,830 - BPHYT_RS22625 0.51 +1.4 632,988 + BPHYT_RS22625 0.63 +0.4 632,989 - BPHYT_RS22625 0.63 -1.6 633,120 + BPHYT_RS22625 0.73 +0.5 633,120 + BPHYT_RS22625 0.73 -0.0 633,317 + BPHYT_RS22625 0.88 -1.0 633,317 + BPHYT_RS22625 0.88 -0.3 633,318 - BPHYT_RS22625 0.88 -0.4 633,318 - BPHYT_RS22625 0.88 -1.4 633,507 + +1.1 633,508 - +1.0 633,508 - -1.0 633,520 + -2.0 633,664 + -0.8 633,665 - +0.0 633,751 + +1.7 633,791 - -0.8 633,794 + +0.5 633,795 - +0.0 633,800 - +1.4 633,853 + -0.2 633,858 + -1.8 633,859 - -0.3 633,859 - -0.8 633,876 + -0.7 633,876 + +1.0 633,959 - BPHYT_RS22630 0.12 -0.5 634,165 + BPHYT_RS22630 0.40 +1.4 634,165 + BPHYT_RS22630 0.40 +0.5 634,232 - BPHYT_RS22630 0.49 +0.4
Or see this region's nucleotide sequence