Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20560 and BPHYT_RS20565 are separated by 70 nucleotides BPHYT_RS20565 and BPHYT_RS20570 are separated by 261 nucleotides
BPHYT_RS20560: BPHYT_RS20560 - sugar ABC transporter substrate-binding protein, at 174,490 to 175,440
_RS20560
BPHYT_RS20565: BPHYT_RS20565 - photosystem reaction center subunit H, at 175,511 to 175,942
_RS20565
BPHYT_RS20570: BPHYT_RS20570 - heptosyltransferase, at 176,204 to 177,379
_RS20570
Position (kb) 175
176 Strain fitness (log2 ratio) -1
0
1
2 at 174.562 kb on - strand at 174.649 kb on + strand, within BPHYT_RS20560 at 174.661 kb on + strand, within BPHYT_RS20560 at 174.946 kb on + strand, within BPHYT_RS20560 at 174.946 kb on + strand, within BPHYT_RS20560 at 174.947 kb on - strand, within BPHYT_RS20560 at 175.099 kb on + strand, within BPHYT_RS20560 at 175.234 kb on + strand, within BPHYT_RS20560 at 175.246 kb on + strand, within BPHYT_RS20560 at 175.561 kb on - strand, within BPHYT_RS20565 at 175.659 kb on + strand, within BPHYT_RS20565 at 175.659 kb on + strand, within BPHYT_RS20565 at 175.660 kb on - strand, within BPHYT_RS20565 at 175.704 kb on + strand, within BPHYT_RS20565 at 175.965 kb on + strand at 175.966 kb on - strand at 176.048 kb on - strand at 176.258 kb on + strand at 176.526 kb on + strand, within BPHYT_RS20570 at 176.600 kb on + strand, within BPHYT_RS20570 at 176.601 kb on - strand, within BPHYT_RS20570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 174,562 - -0.7 174,649 + BPHYT_RS20560 0.17 -0.0 174,661 + BPHYT_RS20560 0.18 -0.2 174,946 + BPHYT_RS20560 0.48 -0.2 174,946 + BPHYT_RS20560 0.48 +1.0 174,947 - BPHYT_RS20560 0.48 -0.2 175,099 + BPHYT_RS20560 0.64 +1.3 175,234 + BPHYT_RS20560 0.78 -0.0 175,246 + BPHYT_RS20560 0.79 +0.3 175,561 - BPHYT_RS20565 0.12 +1.9 175,659 + BPHYT_RS20565 0.34 +0.7 175,659 + BPHYT_RS20565 0.34 +0.9 175,660 - BPHYT_RS20565 0.34 +1.7 175,704 + BPHYT_RS20565 0.45 -0.0 175,965 + -0.3 175,966 - -0.1 176,048 - -0.0 176,258 + -0.8 176,526 + BPHYT_RS20570 0.27 -0.7 176,600 + BPHYT_RS20570 0.34 -0.6 176,601 - BPHYT_RS20570 0.34 +0.7
Or see this region's nucleotide sequence