Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17915 and BPHYT_RS17920 are separated by 123 nucleotides BPHYT_RS17920 and BPHYT_RS17925 are separated by 145 nucleotides BPHYT_RS17925 and BPHYT_RS17930 are separated by 22 nucleotides
BPHYT_RS17915: BPHYT_RS17915 - penicillin-binding protein 1A, at 4,045,074 to 4,047,473
_RS17915
BPHYT_RS17920: BPHYT_RS17920 - protein CyaY, at 4,047,597 to 4,047,914
_RS17920
BPHYT_RS17925: BPHYT_RS17925 - hypothetical protein, at 4,048,060 to 4,048,275
_RS17925
BPHYT_RS17930: BPHYT_RS17930 - diaminopimelate decarboxylase, at 4,048,298 to 4,049,560
_RS17930
Position (kb) 4047
4048 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4047.485 kb on - strand at 4047.485 kb on - strand at 4047.485 kb on - strand at 4047.517 kb on + strand at 4047.681 kb on - strand, within BPHYT_RS17920 at 4047.899 kb on - strand at 4047.931 kb on + strand at 4047.935 kb on + strand at 4048.141 kb on + strand, within BPHYT_RS17925 at 4048.142 kb on - strand, within BPHYT_RS17925 at 4048.320 kb on - strand at 4048.392 kb on - strand at 4048.397 kb on + strand at 4048.784 kb on + strand, within BPHYT_RS17930 at 4048.784 kb on + strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.785 kb on - strand, within BPHYT_RS17930 at 4048.847 kb on + strand, within BPHYT_RS17930 at 4048.848 kb on - strand, within BPHYT_RS17930 at 4048.900 kb on + strand, within BPHYT_RS17930 at 4048.901 kb on - strand, within BPHYT_RS17930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 4,047,485 - -0.8 4,047,485 - +1.0 4,047,485 - +0.6 4,047,517 + +0.0 4,047,681 - BPHYT_RS17920 0.26 -1.1 4,047,899 - -2.0 4,047,931 + -0.4 4,047,935 + +0.0 4,048,141 + BPHYT_RS17925 0.38 -0.9 4,048,142 - BPHYT_RS17925 0.38 -0.0 4,048,320 - +0.1 4,048,392 - -0.3 4,048,397 + +0.6 4,048,784 + BPHYT_RS17930 0.38 -0.0 4,048,784 + BPHYT_RS17930 0.38 +0.0 4,048,785 - BPHYT_RS17930 0.39 -0.3 4,048,785 - BPHYT_RS17930 0.39 +0.3 4,048,785 - BPHYT_RS17930 0.39 -0.5 4,048,785 - BPHYT_RS17930 0.39 -0.8 4,048,847 + BPHYT_RS17930 0.43 +2.0 4,048,848 - BPHYT_RS17930 0.44 +0.9 4,048,900 + BPHYT_RS17930 0.48 +0.6 4,048,901 - BPHYT_RS17930 0.48 -0.4
Or see this region's nucleotide sequence