Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15290 and BPHYT_RS15295 are separated by 79 nucleotides BPHYT_RS15295 and BPHYT_RS15300 are separated by 113 nucleotides BPHYT_RS15300 and BPHYT_RS15305 are separated by 108 nucleotides BPHYT_RS15305 and BPHYT_RS15310 are separated by 150 nucleotides BPHYT_RS15310 and BPHYT_RS15315 are separated by 60 nucleotides
BPHYT_RS15290: BPHYT_RS15290 - tRNA-Arg, at 3,475,597 to 3,475,673
_RS15290
BPHYT_RS15295: BPHYT_RS15295 - tRNA-Arg, at 3,475,753 to 3,475,829
_RS15295
BPHYT_RS15300: BPHYT_RS15300 - hypothetical protein, at 3,475,943 to 3,476,452
_RS15300
BPHYT_RS15305: BPHYT_RS15305 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,476,561 to 3,478,918
_RS15305
BPHYT_RS15310: BPHYT_RS15310 - DNA-directed RNA polymerase subunit omega, at 3,479,069 to 3,479,272
_RS15310
BPHYT_RS15315: BPHYT_RS15315 - guanylate kinase, at 3,479,333 to 3,480,013
_RS15315
Position (kb) 3476
3477
3478
3479 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3475.604 kb on + strand at 3475.622 kb on + strand, within BPHYT_RS15290 at 3475.622 kb on + strand, within BPHYT_RS15290 at 3475.622 kb on + strand, within BPHYT_RS15290 at 3475.676 kb on + strand at 3475.676 kb on + strand at 3475.713 kb on + strand at 3475.733 kb on - strand at 3475.747 kb on + strand at 3475.832 kb on + strand at 3476.302 kb on + strand, within BPHYT_RS15300 at 3476.303 kb on - strand, within BPHYT_RS15300 at 3476.373 kb on + strand, within BPHYT_RS15300 at 3476.565 kb on + strand at 3476.565 kb on + strand at 3476.565 kb on + strand at 3476.777 kb on - strand at 3476.798 kb on - strand, within BPHYT_RS15305 at 3476.798 kb on - strand, within BPHYT_RS15305 at 3476.798 kb on - strand, within BPHYT_RS15305 at 3476.985 kb on + strand, within BPHYT_RS15305 at 3476.986 kb on - strand, within BPHYT_RS15305 at 3476.986 kb on - strand, within BPHYT_RS15305 at 3476.986 kb on - strand, within BPHYT_RS15305 at 3476.986 kb on - strand, within BPHYT_RS15305 at 3476.986 kb on - strand, within BPHYT_RS15305 at 3477.061 kb on + strand, within BPHYT_RS15305 at 3477.421 kb on - strand, within BPHYT_RS15305 at 3477.537 kb on + strand, within BPHYT_RS15305 at 3477.603 kb on + strand, within BPHYT_RS15305 at 3477.604 kb on - strand, within BPHYT_RS15305 at 3477.604 kb on - strand, within BPHYT_RS15305 at 3477.604 kb on - strand, within BPHYT_RS15305 at 3477.604 kb on - strand, within BPHYT_RS15305 at 3478.442 kb on - strand, within BPHYT_RS15305 at 3478.729 kb on - strand at 3478.972 kb on - strand at 3478.972 kb on - strand at 3478.972 kb on - strand at 3478.972 kb on - strand at 3478.972 kb on - strand at 3478.975 kb on + strand at 3478.975 kb on + strand at 3478.976 kb on - strand at 3479.309 kb on + strand at 3479.310 kb on - strand at 3479.310 kb on - strand at 3479.310 kb on - strand at 3479.310 kb on - strand at 3479.310 kb on - strand at 3479.310 kb on - strand at 3479.310 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 3,475,604 + -1.0 3,475,622 + BPHYT_RS15290 0.32 -0.6 3,475,622 + BPHYT_RS15290 0.32 +0.0 3,475,622 + BPHYT_RS15290 0.32 -1.8 3,475,676 + -2.8 3,475,676 + -2.6 3,475,713 + +0.2 3,475,733 - -0.8 3,475,747 + +0.4 3,475,832 + +1.1 3,476,302 + BPHYT_RS15300 0.70 +0.0 3,476,303 - BPHYT_RS15300 0.71 +0.2 3,476,373 + BPHYT_RS15300 0.84 -0.1 3,476,565 + -0.9 3,476,565 + -0.3 3,476,565 + +0.8 3,476,777 - -0.3 3,476,798 - BPHYT_RS15305 0.10 -1.8 3,476,798 - BPHYT_RS15305 0.10 -2.8 3,476,798 - BPHYT_RS15305 0.10 -1.7 3,476,985 + BPHYT_RS15305 0.18 +0.1 3,476,986 - BPHYT_RS15305 0.18 -0.8 3,476,986 - BPHYT_RS15305 0.18 -0.8 3,476,986 - BPHYT_RS15305 0.18 -0.6 3,476,986 - BPHYT_RS15305 0.18 -0.7 3,476,986 - BPHYT_RS15305 0.18 +0.0 3,477,061 + BPHYT_RS15305 0.21 -2.1 3,477,421 - BPHYT_RS15305 0.36 -1.6 3,477,537 + BPHYT_RS15305 0.41 -2.3 3,477,603 + BPHYT_RS15305 0.44 -2.9 3,477,604 - BPHYT_RS15305 0.44 -0.4 3,477,604 - BPHYT_RS15305 0.44 -0.5 3,477,604 - BPHYT_RS15305 0.44 +0.3 3,477,604 - BPHYT_RS15305 0.44 -0.5 3,478,442 - BPHYT_RS15305 0.80 +0.8 3,478,729 - -0.2 3,478,972 - -0.9 3,478,972 - -0.3 3,478,972 - +0.2 3,478,972 - +0.9 3,478,972 - -0.4 3,478,975 + +0.0 3,478,975 + -1.0 3,478,976 - -1.3 3,479,309 + -2.8 3,479,310 - -0.1 3,479,310 - +0.0 3,479,310 - -0.1 3,479,310 - +0.4 3,479,310 - +1.4 3,479,310 - -0.3 3,479,310 - +1.1
Or see this region's nucleotide sequence