Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13905

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13900 and BPHYT_RS13905 are separated by 103 nucleotidesBPHYT_RS13905 and BPHYT_RS13910 are separated by 64 nucleotides BPHYT_RS13900: BPHYT_RS13900 - ATPase, at 3,173,082 to 3,174,239 _RS13900 BPHYT_RS13905: BPHYT_RS13905 - ABC transporter ATP-binding protein, at 3,174,343 to 3,175,119 _RS13905 BPHYT_RS13910: BPHYT_RS13910 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data), at 3,175,184 to 3,177,229 _RS13910 Position (kb) 3174 3175 3176Strain fitness (log2 ratio) -3 -2 -1 0 1at 3173.669 kb on + strand, within BPHYT_RS13900at 3174.135 kb on + strandat 3174.136 kb on - strandat 3174.211 kb on - strandat 3175.545 kb on + strand, within BPHYT_RS13910at 3175.631 kb on + strand, within BPHYT_RS13910at 3175.631 kb on + strand, within BPHYT_RS13910at 3175.968 kb on + strand, within BPHYT_RS13910

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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3,173,669 + BPHYT_RS13900 0.51 -3.0
3,174,135 + -0.6
3,174,136 - +1.0
3,174,211 - -2.8
3,175,545 + BPHYT_RS13910 0.18 -0.6
3,175,631 + BPHYT_RS13910 0.22 -0.2
3,175,631 + BPHYT_RS13910 0.22 -2.6
3,175,968 + BPHYT_RS13910 0.38 -0.8

Or see this region's nucleotide sequence