Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08155 and BPHYT_RS08160 are separated by 140 nucleotides BPHYT_RS08160 and BPHYT_RS08165 overlap by 4 nucleotides BPHYT_RS08165 and BPHYT_RS08170 are separated by 100 nucleotides
BPHYT_RS08155: BPHYT_RS08155 - pilus biosynthesis protein, at 1,866,339 to 1,866,518
_RS08155
BPHYT_RS08160: BPHYT_RS08160 - membrane protein, at 1,866,659 to 1,867,159
_RS08160
BPHYT_RS08165: BPHYT_RS08165 - pilus assembly protein TadE, at 1,867,156 to 1,867,653
_RS08165
BPHYT_RS08170: BPHYT_RS08170 - pilus assembly protein CpaB, at 1,867,754 to 1,868,704
_RS08170
Position (kb) 1867
1868 Strain fitness (log2 ratio) -1
0
1 at 1866.390 kb on - strand, within BPHYT_RS08155 at 1866.517 kb on - strand at 1866.530 kb on + strand at 1866.583 kb on + strand at 1866.684 kb on + strand at 1866.736 kb on + strand, within BPHYT_RS08160 at 1866.736 kb on + strand, within BPHYT_RS08160 at 1866.736 kb on + strand, within BPHYT_RS08160 at 1866.737 kb on - strand, within BPHYT_RS08160 at 1866.737 kb on - strand, within BPHYT_RS08160 at 1866.737 kb on - strand, within BPHYT_RS08160 at 1866.737 kb on - strand, within BPHYT_RS08160 at 1867.010 kb on - strand, within BPHYT_RS08160 at 1867.010 kb on - strand, within BPHYT_RS08160 at 1867.540 kb on + strand, within BPHYT_RS08165 at 1868.606 kb on - strand, within BPHYT_RS08170 at 1868.647 kb on + strand at 1868.648 kb on - strand at 1868.648 kb on - strand at 1868.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,866,390 - BPHYT_RS08155 0.28 -0.6 1,866,517 - +0.7 1,866,530 + +0.6 1,866,583 + -0.1 1,866,684 + +0.6 1,866,736 + BPHYT_RS08160 0.15 -0.2 1,866,736 + BPHYT_RS08160 0.15 -0.6 1,866,736 + BPHYT_RS08160 0.15 -0.2 1,866,737 - BPHYT_RS08160 0.16 +0.9 1,866,737 - BPHYT_RS08160 0.16 -0.1 1,866,737 - BPHYT_RS08160 0.16 +1.0 1,866,737 - BPHYT_RS08160 0.16 -0.3 1,867,010 - BPHYT_RS08160 0.70 +0.7 1,867,010 - BPHYT_RS08160 0.70 -1.2 1,867,540 + BPHYT_RS08165 0.77 -1.0 1,868,606 - BPHYT_RS08170 0.90 -1.2 1,868,647 + +0.4 1,868,648 - +1.6 1,868,648 - -0.6 1,868,648 - -0.0
Or see this region's nucleotide sequence