Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07665

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07660 and BPHYT_RS07665 are separated by 560 nucleotidesBPHYT_RS07665 and BPHYT_RS07670 are separated by 28 nucleotides BPHYT_RS07660: BPHYT_RS07660 - sulfonate ABC transporter substrate-binding protein, at 1,743,601 to 1,744,587 _RS07660 BPHYT_RS07665: BPHYT_RS07665 - hypothetical protein, at 1,745,148 to 1,745,699 _RS07665 BPHYT_RS07670: BPHYT_RS07670 - patatin, at 1,745,728 to 1,746,681 _RS07670 Position (kb) 1745 1746Strain fitness (log2 ratio) -1 0 1 2at 1744.199 kb on - strand, within BPHYT_RS07660at 1745.414 kb on + strand, within BPHYT_RS07665at 1745.418 kb on + strand, within BPHYT_RS07665at 1745.419 kb on - strand, within BPHYT_RS07665at 1745.661 kb on + strandat 1745.704 kb on + strandat 1745.705 kb on - strandat 1745.799 kb on + strandat 1746.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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1,744,199 - BPHYT_RS07660 0.61 +0.1
1,745,414 + BPHYT_RS07665 0.48 +2.7
1,745,418 + BPHYT_RS07665 0.49 -0.6
1,745,419 - BPHYT_RS07665 0.49 -0.0
1,745,661 + -0.8
1,745,704 + -0.1
1,745,705 - -0.0
1,745,799 + +0.1
1,746,643 - -0.4

Or see this region's nucleotide sequence