Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05670

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05665 and BPHYT_RS05670 are separated by 104 nucleotidesBPHYT_RS05670 and BPHYT_RS05675 overlap by 11 nucleotides BPHYT_RS05665: BPHYT_RS05665 - integrase, at 1,293,672 to 1,294,769 _RS05665 BPHYT_RS05670: BPHYT_RS05670 - hypothetical protein, at 1,294,874 to 1,296,013 _RS05670 BPHYT_RS05675: BPHYT_RS05675 - hypothetical protein, at 1,296,003 to 1,297,013 _RS05675 Position (kb) 1294 1295 1296 1297Strain fitness (log2 ratio) -1 0 1 2at 1293.918 kb on + strand, within BPHYT_RS05665at 1294.032 kb on - strand, within BPHYT_RS05665at 1294.032 kb on - strand, within BPHYT_RS05665at 1294.207 kb on + strand, within BPHYT_RS05665at 1294.208 kb on - strandat 1294.552 kb on - strand, within BPHYT_RS05665at 1294.706 kb on + strandat 1294.707 kb on - strandat 1294.714 kb on + strandat 1294.754 kb on - strandat 1294.756 kb on + strandat 1294.785 kb on + strandat 1294.786 kb on - strandat 1295.274 kb on - strand, within BPHYT_RS05670at 1295.291 kb on - strand, within BPHYT_RS05670at 1295.324 kb on - strand, within BPHYT_RS05670at 1295.432 kb on - strand, within BPHYT_RS05670at 1295.607 kb on - strand, within BPHYT_RS05670at 1295.802 kb on - strand, within BPHYT_RS05670at 1295.802 kb on - strand, within BPHYT_RS05670at 1295.850 kb on + strand, within BPHYT_RS05670at 1295.850 kb on + strand, within BPHYT_RS05670at 1295.851 kb on - strand, within BPHYT_RS05670at 1295.959 kb on + strandat 1296.011 kb on + strandat 1296.209 kb on - strand, within BPHYT_RS05675at 1296.209 kb on - strand, within BPHYT_RS05675at 1296.228 kb on + strand, within BPHYT_RS05675at 1296.228 kb on + strand, within BPHYT_RS05675at 1296.232 kb on + strand, within BPHYT_RS05675at 1296.233 kb on - strand, within BPHYT_RS05675at 1296.233 kb on - strand, within BPHYT_RS05675at 1296.233 kb on - strand, within BPHYT_RS05675at 1296.354 kb on + strand, within BPHYT_RS05675at 1296.538 kb on + strand, within BPHYT_RS05675at 1296.635 kb on - strandat 1296.635 kb on - strand, within BPHYT_RS05675at 1296.750 kb on - strand, within BPHYT_RS05675at 1296.816 kb on + strand, within BPHYT_RS05675at 1296.925 kb on + strandat 1296.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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1,293,918 + BPHYT_RS05665 0.22 -0.7
1,294,032 - BPHYT_RS05665 0.33 +2.3
1,294,032 - BPHYT_RS05665 0.33 -0.4
1,294,207 + BPHYT_RS05665 0.49 +0.2
1,294,208 - +0.0
1,294,552 - BPHYT_RS05665 0.80 +0.3
1,294,706 + +1.0
1,294,707 - +0.1
1,294,714 + -0.5
1,294,754 - -0.2
1,294,756 + -0.3
1,294,785 + +0.8
1,294,786 - -0.3
1,295,274 - BPHYT_RS05670 0.35 -0.4
1,295,291 - BPHYT_RS05670 0.37 +0.1
1,295,324 - BPHYT_RS05670 0.39 +0.4
1,295,432 - BPHYT_RS05670 0.49 +0.0
1,295,607 - BPHYT_RS05670 0.64 -0.9
1,295,802 - BPHYT_RS05670 0.81 +0.6
1,295,802 - BPHYT_RS05670 0.81 -0.6
1,295,850 + BPHYT_RS05670 0.86 +0.8
1,295,850 + BPHYT_RS05670 0.86 +0.2
1,295,851 - BPHYT_RS05670 0.86 -1.3
1,295,959 + +0.3
1,296,011 + +0.2
1,296,209 - BPHYT_RS05675 0.20 -0.2
1,296,209 - BPHYT_RS05675 0.20 -0.7
1,296,228 + BPHYT_RS05675 0.22 +0.4
1,296,228 + BPHYT_RS05675 0.22 +0.0
1,296,232 + BPHYT_RS05675 0.23 -0.1
1,296,233 - BPHYT_RS05675 0.23 -0.3
1,296,233 - BPHYT_RS05675 0.23 +2.0
1,296,233 - BPHYT_RS05675 0.23 +2.3
1,296,354 + BPHYT_RS05675 0.35 +1.0
1,296,538 + BPHYT_RS05675 0.53 +0.6
1,296,635 - -0.7
1,296,635 - BPHYT_RS05675 0.63 +0.0
1,296,750 - BPHYT_RS05675 0.74 -1.1
1,296,816 + BPHYT_RS05675 0.80 -0.5
1,296,925 + +0.0
1,296,926 - +1.0

Or see this region's nucleotide sequence