Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04995 and BPHYT_RS05000 are separated by 217 nucleotides BPHYT_RS05000 and BPHYT_RS05005 are separated by 116 nucleotides BPHYT_RS05005 and BPHYT_RS05010 are separated by 161 nucleotides
BPHYT_RS04995: BPHYT_RS04995 - hypothetical protein, at 1,150,662 to 1,151,114
_RS04995
BPHYT_RS05000: BPHYT_RS05000 - nucleotide pyrophosphatase, at 1,151,332 to 1,153,005
_RS05000
BPHYT_RS05005: BPHYT_RS05005 - hypothetical protein, at 1,153,122 to 1,153,475
_RS05005
BPHYT_RS05010: BPHYT_RS05010 - RpiR family transcriptional regulator, at 1,153,637 to 1,155,553
_RS05010
Position (kb) 1151
1152
1153
1154 Strain fitness (log2 ratio) -1
0
1 at 1150.921 kb on + strand, within BPHYT_RS04995 at 1151.083 kb on + strand at 1151.333 kb on + strand at 1151.571 kb on + strand, within BPHYT_RS05000 at 1151.573 kb on + strand, within BPHYT_RS05000 at 1151.573 kb on + strand, within BPHYT_RS05000 at 1151.573 kb on + strand at 1152.048 kb on - strand, within BPHYT_RS05000 at 1152.266 kb on + strand, within BPHYT_RS05000 at 1152.266 kb on + strand, within BPHYT_RS05000 at 1152.267 kb on - strand, within BPHYT_RS05000 at 1152.278 kb on + strand, within BPHYT_RS05000 at 1152.326 kb on - strand, within BPHYT_RS05000 at 1152.455 kb on + strand, within BPHYT_RS05000 at 1152.661 kb on + strand, within BPHYT_RS05000 at 1152.661 kb on + strand, within BPHYT_RS05000 at 1153.069 kb on + strand at 1153.122 kb on - strand at 1153.248 kb on - strand, within BPHYT_RS05005 at 1153.354 kb on - strand, within BPHYT_RS05005 at 1153.530 kb on - strand at 1153.530 kb on - strand at 1153.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,150,921 + BPHYT_RS04995 0.57 -0.2 1,151,083 + -0.6 1,151,333 + +1.0 1,151,571 + BPHYT_RS05000 0.14 +0.4 1,151,573 + BPHYT_RS05000 0.14 -0.0 1,151,573 + BPHYT_RS05000 0.14 -0.5 1,151,573 + -0.6 1,152,048 - BPHYT_RS05000 0.43 +1.7 1,152,266 + BPHYT_RS05000 0.56 +0.7 1,152,266 + BPHYT_RS05000 0.56 -0.6 1,152,267 - BPHYT_RS05000 0.56 -0.2 1,152,278 + BPHYT_RS05000 0.57 -0.0 1,152,326 - BPHYT_RS05000 0.59 +1.6 1,152,455 + BPHYT_RS05000 0.67 +1.3 1,152,661 + BPHYT_RS05000 0.79 +0.8 1,152,661 + BPHYT_RS05000 0.79 +0.8 1,153,069 + +1.2 1,153,122 - -1.0 1,153,248 - BPHYT_RS05005 0.36 -0.4 1,153,354 - BPHYT_RS05005 0.66 +1.0 1,153,530 - +1.0 1,153,530 - -0.9 1,153,786 + -1.3
Or see this region's nucleotide sequence